Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0634
         (544 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      27   0.14 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      27   0.14 
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   9.2  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   9.2  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   9.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 238 PDGKFGIPQKAIDSVNANKIGLKGPLMTPVGKG 336
           P    GIP   +DS  A  +GL  P M P   G
Sbjct: 138 PPAHMGIPPYQLDSKTAGSMGLTRPPMYPFPAG 170


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 238 PDGKFGIPQKAIDSVNANKIGLKGPLMTPVGKG 336
           P    GIP   +DS  A  +GL  P M P   G
Sbjct: 30  PPAHMGIPPYQLDSKTAGSMGLTRPPMYPFPAG 62


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 273 NRFLGDTEFAIWTPNSCYIHFLPFDRYFSCF 181
           N ++    FA+ T N  +  FLP D  ++ F
Sbjct: 158 NHWVRSGLFALITGNVLFYPFLPSDVSYNLF 188


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 236 PLTAVTSTSSHSIGTLAASKIF*TATVISGPI 141
           P+  VTS   +   +  + K+F +  +ISG I
Sbjct: 211 PVNGVTSEKCNLTFSWYSKKVFYSKIIISGSI 242


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 273 NRFLGDTEFAIWTPNSCYIHFLPFDRYFSCF 181
           N ++    FA+ T N  +  FLP D  ++ F
Sbjct: 114 NHWVRSGLFALITGNVLFYPFLPSDVSYNLF 144


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.136    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,014
Number of Sequences: 336
Number of extensions: 2361
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)