Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0634
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1049 + 8275837-8275859,8276428-8276503,8276545-8276634,827... 30 1.4
01_06_1120 - 34645676-34645768,34645880-34645966,34646443-346465... 29 2.4
05_03_0557 - 15441039-15442730 29 3.2
04_04_1191 + 31599067-31600194 29 3.2
10_08_0949 - 21759821-21759833,21759985-21760301,21760650-217607... 28 4.2
07_01_0461 + 3492302-3492413,3492868-3492964,3493053-3493131,349... 28 4.2
05_05_0174 - 22960732-22960815,22960907-22961419,22961576-229620... 28 4.2
10_01_0156 + 1771224-1772099 27 7.3
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 27 7.3
03_02_0291 + 7148768-7148853,7148966-7149170,7149823-7150238,715... 27 7.3
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 27 9.7
09_04_0291 + 16433097-16433942,16434708-16434851,16435226-164353... 27 9.7
05_07_0105 - 27716126-27716218,27716548-27716658,27716764-277168... 27 9.7
>01_01_1049 +
8275837-8275859,8276428-8276503,8276545-8276634,
8276721-8276836,8276918-8277017,8277808-8277879,
8277954-8278001,8278093-8278170,8278272-8278391,
8278496-8278601,8279574-8279737,8280403-8280537,
8280766-8280896,8282016-8282094,8282284-8282373
Length = 475
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 525 LDGLHDPVDDLVLDTGILTLGVLSDRDHVNVV 430
L G+ PVDDL D ++ G++ D+D N+V
Sbjct: 47 LKGMGFPVDDLEFDPDLVIRGLIMDKDKGNLV 78
>01_06_1120 -
34645676-34645768,34645880-34645966,34646443-34646508,
34647126-34647215,34647317-34647397,34647598-34647675,
34647788-34647878,34647969-34648110,34648479-34648590
Length = 279
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = -2
Query: 252 EFAIWTPNSCYIHFLPFDRYFSCFEDFLNGDRDLGPNTMSRDERNLAHASAVLSSAGSGR 73
+FA+ TP S + LP ++ SC G+ + P T + + +L H V+ GR
Sbjct: 64 KFALPTPTS--VLGLPIGQHISCRGQDATGEEVIKPYTPTTLDSDLGHFELVIKMYPQGR 121
Query: 72 W-HNFPDYSCSHFKNFR 25
H+F + + + +
Sbjct: 122 MSHHFREMKVGDYMSVK 138
>05_03_0557 - 15441039-15442730
Length = 563
Score = 28.7 bits (61), Expect = 3.2
Identities = 25/100 (25%), Positives = 44/100 (44%)
Frame = -3
Query: 443 TSTLSYSVLIPSKLLQGLTLAYKSNSFLRAKLSDL*PLPTGVIRGPFKPILLAFTESIAF 264
+ TL Y + + L+GL + S LR+KL+ P P + + LAF
Sbjct: 155 SGTLPYRTALAAVFLEGLIFLFISLVGLRSKLAKFIPKPVRISSSAGIGLFLAFI----- 209
Query: 263 WGIPNLPSGPLTAVTSTSSHSIGTLAASKIF*TATVISGP 144
G+ + L +S++ ++G AS+ A V++ P
Sbjct: 210 -GLQSSEGVGLVGFSSSTLVTLGACPASQRASVAPVVTFP 248
>04_04_1191 + 31599067-31600194
Length = 375
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 293 LLAFTESIAFWGIPNLPSGPLTAVTSTS 210
LL E + FWG+PNL S P + TS
Sbjct: 290 LLTSLERLNFWGLPNLLSLPANLASLTS 317
>10_08_0949 -
21759821-21759833,21759985-21760301,21760650-21760728,
21760816-21760912,21761305-21761410
Length = 203
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 270 RFLGDTEFAIWTPNSCYIHFLPFDRYF 190
RFL + EF N YIH+L +RYF
Sbjct: 17 RFLLELEFIQCLANPTYIHYLAQNRYF 43
>07_01_0461 +
3492302-3492413,3492868-3492964,3493053-3493131,
3493484-3493794,3494219-3494231
Length = 203
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 270 RFLGDTEFAIWTPNSCYIHFLPFDRYF 190
RFL + EF N YIH+L +RYF
Sbjct: 19 RFLLELEFIQCLANPTYIHYLAQNRYF 45
>05_05_0174 -
22960732-22960815,22960907-22961419,22961576-22962058,
22964191-22964673
Length = 520
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 283 NANKIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRPCKSLEGIKTL 426
+A +GL + P+G+G+ +L+ ++ F L + P SL G+ +L
Sbjct: 337 SALNVGLGVGAILPLGRGFMNLSSSVPDRFYLGGHSSPVCSLSGLSSL 384
>10_01_0156 + 1771224-1772099
Length = 291
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -2
Query: 330 TDWSHQGTLQANFIGIYRVNRFLG---DTEFAIWTPNSCYIH 214
+D + G L N Y +RF+ DT IW PN Y H
Sbjct: 147 SDGGNLGLLATNHSKAYGTDRFIAVEFDTYNNIWDPNKTYDH 188
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 201 DRYFSCFEDFLNGDRDLGPNTMSRDERNLAHASAVLSSAGSG 76
D++F CFE+ +N +LG + + ++ +A +S+ SG
Sbjct: 399 DQFFECFEELMNSQTNLGNSGIWDWTCSVFNAITFVSTLASG 440
>03_02_0291 +
7148768-7148853,7148966-7149170,7149823-7150238,
7150325-7150631,7150722-7151186
Length = 492
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Frame = +1
Query: 175 IFEAAKVPIEWE------EVDVTAVRGPDGKFGI-PQKAIDSVNANKI 297
I A V + WE EV++ V+ DG + + P+KA+D VN N I
Sbjct: 157 IITGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVDMVNENTI 204
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 27.1 bits (57), Expect = 9.7
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 55 IRKIVPATRAGA-AQYSTGVRKVTL---IPGHGIGPEITVA-VQKIFEAAKVPIE 204
+R I P RA A R VT+ P HGIG EI ++ V++ FE P+E
Sbjct: 278 LRSIRPLDRATINASVRKTNRLVTIEESFPQHGIGAEICMSVVEESFEYLDAPVE 332
>09_04_0291 +
16433097-16433942,16434708-16434851,16435226-16435390,
16435551-16435562
Length = 388
Score = 27.1 bits (57), Expect = 9.7
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Frame = -3
Query: 473 SPSVFSLIVTT-STLSYSV----LIPSKLLQGLTLAYKSNSFLRAKL 348
+P++ S +VT+ TL Y L P+KLL+GL +YK+ L+ L
Sbjct: 257 APNLLSAMVTSLETLDYYYYALPLSPTKLLKGLPSSYKNLKRLKVHL 303
>05_07_0105 -
27716126-27716218,27716548-27716658,27716764-27716815,
27716895-27717034,27717298-27717422,27717514-27717638,
27717853-27717898,27718374-27718947
Length = 421
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 409 EGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDGVVQSIK 525
E ++ L + D+V N +G+ IE EI+DGVV +++
Sbjct: 255 EALQKLNKHYDIVV---NIQGDEPLIEPEIIDGVVMALQ 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.136 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,335,898
Number of Sequences: 37544
Number of extensions: 287022
Number of successful extensions: 935
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -