Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0634
(544 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 8e-16
SB_55110| Best HMM Match : Squash (HMM E-Value=0.21) 35 0.049
SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4) 31 0.46
SB_7384| Best HMM Match : CXC (HMM E-Value=2.2e-05) 30 1.1
SB_10370| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_1757| Best HMM Match : UPF0126 (HMM E-Value=1.3) 29 2.5
SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_29996| Best HMM Match : Bombolitin (HMM E-Value=4.4) 28 4.3
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041) 28 5.7
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_37309| Best HMM Match : Toxin_29 (HMM E-Value=1.2) 27 7.5
SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29) 27 9.9
SB_22141| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 80.6 bits (190), Expect = 8e-16
Identities = 35/58 (60%), Positives = 46/58 (79%)
Frame = +1
Query: 361 RKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLIT 534
+ E DL+ANV C+SL GIKT +DN+D+V IRE TEGEY+ +EHE V GVV+ +K+IT
Sbjct: 89 KTELDLFANVVHCRSLPGIKTRHDNIDIVIIREQTEGEYTSLEHESVPGVVEMLKIIT 146
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 106 GVRKVTLIPGHGIGPEITVAVQKIFE 183
G VTLIPG G+GPE+ V+++F+
Sbjct: 64 GRHTVTLIPGDGVGPELVNCVKQMFK 89
>SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)
Length = 573
Score = 34.7 bits (76), Expect = 0.049
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = -2
Query: 318 HQGTLQANFIGIYRVNRFLGDTEFAIWTPNSCYIHFLPFDRYFSCFEDFLNGDRDLGPNT 139
H+G +AN +G+Y++ DTE A T + CY+ F P YF + +R + +
Sbjct: 80 HRG--EANIVGMYKIKNVTKDTE-AKETLSGCYVVFPPSLNYFIAHGTCIEKNRAVNLDV 136
Query: 138 MSRDERNLAHASAVLS 91
+ +R A +++++
Sbjct: 137 LCYCDRGFAMITSLIA 152
>SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4)
Length = 327
Score = 31.5 bits (68), Expect = 0.46
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 533 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 378
VIS ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 50 VISYLNCVPSKTCTAMVKSYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISY 101
Score = 31.5 bits (68), Expect = 0.46
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 533 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 378
VIS ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 242 VISYLNCVPSKTCTAMVKSYLNCVPSKTCTAMVISYLNCVPSKTCTAMAISY 293
Score = 30.7 bits (66), Expect = 0.80
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 533 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 378
VIS ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 82 VISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISY 133
Score = 30.7 bits (66), Expect = 0.80
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 533 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 378
VIS ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 98 VISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISY 149
Score = 30.7 bits (66), Expect = 0.80
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 533 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 378
VIS ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 114 VISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISY 165
Score = 30.7 bits (66), Expect = 0.80
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 533 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 378
VIS ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 130 VISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISY 181
Score = 30.7 bits (66), Expect = 0.80
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 533 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 378
VIS ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 146 VISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISY 197
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 533 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 378
VIS ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 194 VISYLNCVPFKTCTAMVISYLNCVPSKTCTAMAISYLNCVPSKTCTAMVISY 245
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -3
Query: 533 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 378
VIS ++C T + + Y V S T SY +PSK + ++Y
Sbjct: 34 VISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVKSYLNCVPSKTCTAMVISY 85
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -3
Query: 533 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 378
VIS ++C T + + Y V S T +SY +P K + ++Y
Sbjct: 162 VISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPFKTCTAMVISY 213
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -3
Query: 533 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 378
VIS ++C T + + Y V T +SY +PSK + ++Y
Sbjct: 178 VISYLNCVPSKTCTAMVISYLNCVPFKTCTAMVISYLNCVPSKTCTAMAISY 229
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -3
Query: 533 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 378
V S ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 66 VKSYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISY 117
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -3
Query: 533 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 378
VIS ++C T + Y V S T +SY +PSK + +Y
Sbjct: 210 VISYLNCVPSKTCTAMAISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVKSY 261
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -3
Query: 530 ISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 378
IS ++C T + + Y V S T SY +PSK + ++Y
Sbjct: 227 ISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVKSYLNCVPSKTCTAMVISY 277
>SB_7384| Best HMM Match : CXC (HMM E-Value=2.2e-05)
Length = 422
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/80 (28%), Positives = 37/80 (46%)
Frame = -3
Query: 539 SSVISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAYKSNSFL 360
+SV S TTP + + PE P I+ T + + L P+K +Q + + + S +
Sbjct: 28 ASVTSSQASTTPIITAVTNPETQPRQTCAILPQKTQAQTPLTPTKTVQ-IGVGHTSPQVV 86
Query: 359 RAKLSDL*PLPTGVIRGPFK 300
S P+ +RGPFK
Sbjct: 87 MLSGS---PIKLTQVRGPFK 103
>SB_10370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 118 VTLIPGHGIGPEITVAVQKIFEA 186
+ +IPG GIGPE+T +K A
Sbjct: 5 IAVIPGDGIGPEVTEQAKKALNA 27
>SB_1757| Best HMM Match : UPF0126 (HMM E-Value=1.3)
Length = 126
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 73 ATRAGAAQYSTGVRKVTLIPGHGIGPEITVAVQKIFEAA 189
ATR+G + + + P H + PEIT AV K+F A
Sbjct: 63 ATRSGTFTATALLGNIPAAPSHAM-PEITTAVSKVFVTA 100
>SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 45 CKNNQENCASDQSRRCSIQHWRAQGYA-HPWTWYWARDHGRR 167
C + CA+ S S+ W QG+A W W R + R
Sbjct: 265 CNKEEAACANKTSMEGSMTIWLPQGWALRKWRHPWQRTYNNR 306
>SB_29996| Best HMM Match : Bombolitin (HMM E-Value=4.4)
Length = 316
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 252 EFAIWTPNSCYIHFLPFDRY 193
EF W PNSC I F+ F ++
Sbjct: 21 EFDFWEPNSCRIRFVDFWKF 40
>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3511
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 21 ICENS*NGCKNNQENCASD 77
+CEN+ N CKNN + C ++
Sbjct: 3381 VCENNVNVCKNNMDMCKNN 3399
Score = 27.1 bits (57), Expect = 9.9
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +3
Query: 21 ICENS*NGCKNNQENCASDQS 83
+CEN+ N C+NN+ C ++++
Sbjct: 3479 VCENNLNVCENNENVCENNEN 3499
>SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041)
Length = 988
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 290 LAFTESIAFWGIPNLPSGPLTAVTSTSSHSIG 195
+A ++FW P + + P T VTS ++ +IG
Sbjct: 616 IASWNGVSFWLYPGMAATPTTVVTSDAAGAIG 647
>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4994
Score = 27.5 bits (58), Expect = 7.5
Identities = 8/39 (20%), Positives = 23/39 (58%)
Frame = +1
Query: 115 KVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEVDVTAV 231
++ + G + P + + Q+ +++ +P W++ +VTA+
Sbjct: 2736 RILIEAGGELAPLLALLFQQSYDSGSLPAAWKDANVTAI 2774
>SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 316 SGDPSSQFYWHLQSQSLFGGYRIC 245
SG+P+ ++ W++QS S G+ +C
Sbjct: 871 SGNPAPRYSWYMQSTSHCRGFGLC 894
>SB_37309| Best HMM Match : Toxin_29 (HMM E-Value=1.2)
Length = 754
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = -2
Query: 288 GIYRVNRFLGDTEFAIWTPNSCYIHFLPFDRYFSCFEDFLN--GDRDLGPNTMSRDERNL 115
G +V +GDT+ + + Y+ FL +++ + FE+ L+ G + ++ ++E +
Sbjct: 205 GSIKVIGGIGDTDVEMLLLENWYLEFLNYNKTIAAFEEELSLLGKKADFKGSLPQNENQV 264
Query: 114 AHAS-AVLSSAGSGRWHNF 61
+ ++LS+ +G + F
Sbjct: 265 SELQLSILSAFDNGSYQTF 283
>SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 27.1 bits (57), Expect = 9.9
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +3
Query: 21 ICENS*NGCKNNQENCASDQS 83
+CEN+ N C+NN+ C ++++
Sbjct: 22 VCENNVNVCENNENVCENNEN 42
>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2835
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 69 HNFPDYSCSHFKNFRKLRRR 10
H DY +HFK F KLR +
Sbjct: 2615 HELVDYMTAHFKQFLKLRNK 2634
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 148 PEITVAVQKIFEAAKVPIEWEEVDVTAV-RGPDGKFGIPQKAI 273
P++ + + F K P ++EEVD A R P G FGI AI
Sbjct: 666 PDVEIPEEDEFYKEKSP-QFEEVDTFAPNRRPTGFFGIDMNAI 707
>SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29)
Length = 407
Score = 27.1 bits (57), Expect = 9.9
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 118 VTLIPGHGIGPEITVAVQKIFEAAKVPIEWE-EVDVTAVRGPDGKFGIPQKAIDSVNANK 294
VTL P H + P TV + + +VP++ E +D GPDG G+ +
Sbjct: 283 VTLHP-HPLRPRRTVT-RSMKWVNRVPVDPEASLDRPGEMGPDGPAGLAGSQGEQGPQGP 340
Query: 295 IGLKGPLMTPVGKGYR 342
+G+KG G G R
Sbjct: 341 VGMKGDNGPQGGAGSR 356
>SB_22141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 391 RPCK--SLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDG 507
+PC L G+KT+ +N+ + I + ++ G+ VDG
Sbjct: 141 KPCMRGELYGVKTITENIALGKITMQSSTDHGGVPSRAVDG 181
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.136 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,362,279
Number of Sequences: 59808
Number of extensions: 323456
Number of successful extensions: 1336
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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