Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0634
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical pr...   244   3e-65
AC006610-5|AAK85453.1|  373|Caenorhabditis elegans Hypothetical ...   116   8e-27
Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical pr...   109   2e-24
Z81046-1|CAB02822.1|  379|Caenorhabditis elegans Hypothetical pr...   106   9e-24
U64849-1|AAC48052.3|  936|Caenorhabditis elegans Daf-12, redunda...    29   1.6  
AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical...    27   6.6  
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical
           protein F43G9.1 protein.
          Length = 358

 Score =  244 bits (597), Expect = 3e-65
 Identities = 120/169 (71%), Positives = 140/169 (82%), Gaps = 1/169 (0%)
 Frame = +1

Query: 40  MAARIIRKIVPATRAGAAQYSTG-VRKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEV 216
           M  + I+K   +T   + +YS+G VR+VTLIPG GIGPEI+ +VQKIFEAA  PI W+ V
Sbjct: 1   MLGKCIKK-ASSTVGQSIRYSSGDVRRVTLIPGDGIGPEISASVQKIFEAADAPIAWDPV 59

Query: 217 DVTAVRGPDGKFGIPQKAIDSVNANKIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRP 396
           DVT V+G DG F IP + I+ ++ANK+GLKGPL TP+GKG+RSLNLA+RKEF LYANVRP
Sbjct: 60  DVTPVKGRDGVFRIPSRCIELMHANKVGLKGPLETPIGKGHRSLNLAVRKEFSLYANVRP 119

Query: 397 CKSLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEA 543
           C+SLEG KTLYDNVDVVTIRENTEGEYSGIEHEIV GVVQSIKLITE A
Sbjct: 120 CRSLEGHKTLYDNVDVVTIRENTEGEYSGIEHEIVPGVVQSIKLITETA 168


>AC006610-5|AAK85453.1|  373|Caenorhabditis elegans Hypothetical
           protein C30F12.7 protein.
          Length = 373

 Score =  116 bits (280), Expect = 8e-27
 Identities = 63/159 (39%), Positives = 92/159 (57%), Gaps = 1/159 (0%)
 Frame = +1

Query: 67  VPATRAGAAQYSTGVRKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEVDVTAVRGPDG 246
           +P  R   A+Y  G   V  +PG GIGPE+   ++ IF     P+ +EEV V++    DG
Sbjct: 22  IPGHRLPLAKYG-GRHTVCALPGDGIGPEMIAHIRNIFSFCHAPVNFEEVQVSSSL-LDG 79

Query: 247 KFGIPQKAIDSVNANKIGLKGPLMTPVGKG-YRSLNLALRKEFDLYANVRPCKSLEGIKT 423
                  AI+    N + +KG + T      + S N+ LR + DLYAN+  C ++  + T
Sbjct: 80  DMDAAMLAIER---NGVAIKGNIETKHDDPQFNSRNVELRTKLDLYANILHCVTIPTVPT 136

Query: 424 LYDNVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEE 540
            +  +D+V IRENTEGEYSG+EHE V G+V+SIK++T E
Sbjct: 137 RHSGIDIVLIRENTEGEYSGLEHEAVPGIVESIKIVTRE 175


>Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical
           protein F35G12.2 protein.
          Length = 396

 Score =  109 bits (261), Expect = 2e-24
 Identities = 60/155 (38%), Positives = 94/155 (60%), Gaps = 5/155 (3%)
 Frame = +1

Query: 91  AQYSTGVRKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKA 270
           A+Y  G   VT++PG GIGPE+   V++I  A + P+++E V++T+            +A
Sbjct: 46  ARYG-GRHNVTVLPGDGIGPEMLHHVERILSAVQAPVDFEVVNLTSKEDASEDLA---EA 101

Query: 271 IDSVNANKIGLKGPLMTPVGK-GYRSLNLALRKEFDLYANVRPCKSLEGIKTLYDNVDVV 447
           I ++  N + LKG + T      + S NL LR++ +LYANV  C ++  + + +  +D+V
Sbjct: 102 ITAIKRNGVALKGNIETKFDNPSFVSRNLELRRQLNLYANVLHCSTIPTVPSRHTGIDMV 161

Query: 448 TIRENTEGEYSGIEHEIVDG----VVQSIKLITEE 540
            IRENTEGEYSG EHE V+     VV+S+K++T E
Sbjct: 162 IIRENTEGEYSGNEHEAVNAPHPRVVESLKVVTRE 196


>Z81046-1|CAB02822.1|  379|Caenorhabditis elegans Hypothetical
           protein C37E2.1 protein.
          Length = 379

 Score =  106 bits (255), Expect = 9e-24
 Identities = 59/146 (40%), Positives = 91/146 (62%), Gaps = 6/146 (4%)
 Frame = +1

Query: 115 KVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNANK 294
           KVT+IPG G+GPE+   VQ I +   +PIE+EE+ ++ V     +    + A++S+  N 
Sbjct: 44  KVTIIPGDGVGPELIYTVQDIVKQTGIPIEFEEIFLSEVHYT--RSSSIENAVESIGRNN 101

Query: 295 -IGLKGPLMTPV---GKG-YRSLNLALRKEFDLYANVRPCKSLEGIKTLYDN-VDVVTIR 456
            + LKG +        +G  + LN+ LR+  DL+ANV   K+L+GIKT +   +D V +R
Sbjct: 102 NVALKGAIEESAVLHTEGELQGLNMRLRRSLDLFANVVHIKTLDGIKTRHGKQLDFVIVR 161

Query: 457 ENTEGEYSGIEHEIVDGVVQSIKLIT 534
           E TEGEYS +EHE+V GV++ +K+ T
Sbjct: 162 EQTEGEYSSLEHELVPGVIECLKIST 187


>U64849-1|AAC48052.3|  936|Caenorhabditis elegans Daf-12, redundant
           with protein 1 protein.
          Length = 936

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 519 GLHDPVDDLVLDTGILTLGVLSDRDHVNVVV 427
           G+H+P+D ++++T +  +G    RD  + VV
Sbjct: 292 GVHEPIDTILINTDVQIIGASDSRDITSSVV 322


>AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical
           protein Y77E11A.12b protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 346 LNLALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDG 507
           LNL  R+  + Y N     S  G ++L D+  + T + N   +  G    I DG
Sbjct: 13  LNLGQRRSSEGYLNANDLLSQGGGESLLDSAGLGTSQPNLTSQRRGTNPSIFDG 66


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 311 GPFKPILLAFTESIAFWGIPNLPSGP 234
           GP  P  + F +   F G+P +PSGP
Sbjct: 108 GPPMPTPMPFPQHFPFPGMPPMPSGP 133


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 311 GPFKPILLAFTESIAFWGIPNLPSGP 234
           GP  P  + F +   F G+P +PSGP
Sbjct: 108 GPPMPTPMPFPQHFPFPGMPPMPSGP 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.136    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,959,441
Number of Sequences: 27780
Number of extensions: 245452
Number of successful extensions: 893
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)