Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0634
(544 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NA... 187 4e-48
At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NA... 179 1e-45
At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NA... 150 7e-37
At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NA... 149 9e-37
At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NA... 146 8e-36
At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NA... 144 4e-35
At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenas... 82 3e-16
At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase, chloro... 38 0.006
At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloro... 36 0.013
At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase, chloro... 36 0.017
At5g05520.1 68418.m00599 outer membrane OMP85 family protein con... 30 1.1
At3g10960.1 68416.m01321 xanthine/uracil permease family protein... 29 2.0
At5g49980.1 68418.m06189 transport inhibitor response protein, p... 24 3.1
At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profi... 28 3.5
At4g36195.1 68417.m05150 serine carboxypeptidase S28 family prot... 28 3.5
At3g28880.1 68416.m03605 ankyrin repeat family protein contains ... 28 3.5
At1g53000.1 68414.m05999 cytidylyltransferase family contains Pf... 28 3.5
At5g25310.1 68418.m03003 exostosin family protein contains Pfam ... 28 4.6
At4g36630.2 68417.m05198 expressed protein 28 4.6
At4g36630.1 68417.m05199 expressed protein 28 4.6
At1g77490.1 68414.m09024 L-ascorbate peroxidase, thylakoid-bound... 27 6.1
At1g07500.1 68414.m00803 expressed protein ; expression supporte... 27 6.1
At4g03175.1 68417.m00434 protein kinase family protein contains ... 27 8.1
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 27 8.1
At3g14980.1 68416.m01894 PHD finger transcription factor, putati... 27 8.1
>At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) [Nicotiana tabacum]
GI:3021506
Length = 374
Score = 187 bits (456), Expect = 4e-48
Identities = 88/148 (59%), Positives = 112/148 (75%)
Frame = +1
Query: 100 STGVRKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDS 279
ST TL PG GIGPEI +V+K+F A VPIEWEE V P + + ++++S
Sbjct: 40 STTPITATLFPGDGIGPEIAESVKKVFTTAGVPIEWEEHYVGTEIDPRTQSFLTWESLES 99
Query: 280 VNANKIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRE 459
V NK+GLKGP+ TP+GKG+RSLNL LRKE +LYANVRPC SL G KT YD+VD++TIRE
Sbjct: 100 VRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVDLITIRE 159
Query: 460 NTEGEYSGIEHEIVDGVVQSIKLITEEA 543
NTEGEYSG+EH++V GVV+S+K+IT +A
Sbjct: 160 NTEGEYSGLEHQVVRGVVESLKIITRQA 187
>At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) GB:CAA65502 GI:3021506
[Nicotiana tabacum]
Length = 374
Score = 179 bits (436), Expect = 1e-45
Identities = 84/143 (58%), Positives = 107/143 (74%)
Frame = +1
Query: 115 KVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNANK 294
K TL PG GIGPEI +V+++F AA V I+W+E V P + + SV NK
Sbjct: 45 KATLFPGDGIGPEIAESVKQVFTAADVVIDWDEQFVGTEVDPRTNSFLTWDNLQSVLKNK 104
Query: 295 IGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGE 474
+GLKGP+ TP+GKG+RSLNL LRKE +LYANVRPC SL G KT YD+VD++TIRENTEGE
Sbjct: 105 VGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVDLITIRENTEGE 164
Query: 475 YSGIEHEIVDGVVQSIKLITEEA 543
YSG+EH++V GVV+S+K+IT +A
Sbjct: 165 YSGLEHQVVKGVVESLKIITRKA 187
>At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 368
Score = 150 bits (363), Expect = 7e-37
Identities = 74/142 (52%), Positives = 103/142 (72%)
Frame = +1
Query: 112 RKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNAN 291
R VTLIPG GIGP +T AV+++ EA P+ +E +V G K +P++ I+SV N
Sbjct: 39 RTVTLIPGDGIGPLVTGAVEQVMEAMHAPVHFERYEVL---GNMRK--VPEEVIESVKRN 93
Query: 292 KIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEG 471
K+ LKG L TPVG G SLN+ LRKE D++A++ C ++ G+ T ++NVD+V IRENTEG
Sbjct: 94 KVCLKGGLATPVGGGVSSLNMQLRKELDIFASLVNCINVPGLVTRHENVDIVVIRENTEG 153
Query: 472 EYSGIEHEIVDGVVQSIKLITE 537
EYSG+EHE+V GVV+S+K+IT+
Sbjct: 154 EYSGLEHEVVPGVVESLKVITK 175
>At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NAD+
isocitrate dehydrogenase subunit 1 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 367
Score = 149 bits (362), Expect = 9e-37
Identities = 74/142 (52%), Positives = 103/142 (72%)
Frame = +1
Query: 112 RKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNAN 291
R VTLIPG GIGP +T AV+++ EA PI +E+ DV G + +P + ++S+ N
Sbjct: 38 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIFFEKYDV---HGEMSR--VPPEVMESIRKN 92
Query: 292 KIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEG 471
K+ LKG L TPVG G SLN+ LRKE DL+A++ C +L G+ T ++NVD+V IRENTEG
Sbjct: 93 KVCLKGGLKTPVGGGVSSLNVQLRKELDLFASLVNCFNLPGLPTRHENVDIVVIRENTEG 152
Query: 472 EYSGIEHEIVDGVVQSIKLITE 537
EY+G+EHE+V GVV+S+K+IT+
Sbjct: 153 EYAGLEHEVVPGVVESLKVITK 174
>At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 367
Score = 146 bits (354), Expect = 8e-36
Identities = 72/142 (50%), Positives = 102/142 (71%)
Frame = +1
Query: 112 RKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNAN 291
R VTLIPG G+GP +T AVQ++ EA P+ +E +V D K +P+ ++S+ N
Sbjct: 38 RPVTLIPGDGVGPLVTNAVQQVMEAMHAPVYFEPFEVHG----DMK-SLPEGLLESIKKN 92
Query: 292 KIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEG 471
K+ LKG L TPVG G SLN+ LRKE DL+A++ C +L G+ + ++NVD+V IRENTEG
Sbjct: 93 KVCLKGGLKTPVGGGVSSLNVNLRKELDLFASLVNCFNLPGLASRHENVDIVVIRENTEG 152
Query: 472 EYSGIEHEIVDGVVQSIKLITE 537
EY+G+EHE+V GVV+S+K+IT+
Sbjct: 153 EYAGLEHEVVPGVVESLKVITK 174
>At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 363
Score = 144 bits (348), Expect = 4e-35
Identities = 71/142 (50%), Positives = 100/142 (70%)
Frame = +1
Query: 112 RKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNAN 291
R VTLIPG G+GP +T AVQ++ EA P+ +E +V D K +P+ ++S+ N
Sbjct: 38 RPVTLIPGDGVGPLVTNAVQQVMEAMHAPVYFEPFEVHG----DMK-SLPEGLLESIKKN 92
Query: 292 KIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEG 471
K+ LKG L TPVG G SLN+ LRKE DL+A++ C +L G+ + ++NVD+V IRENTEG
Sbjct: 93 KVCLKGGLKTPVGGGVSSLNVNLRKELDLFASLVNCFNLPGLASRHENVDIVVIRENTEG 152
Query: 472 EYSGIEHEIVDGVVQSIKLITE 537
EY+G+EHE+V GVV+S+K +E
Sbjct: 153 EYAGLEHEVVPGVVESLKFCSE 174
>At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenase
family protein similar to NAD+ dependent isocitrate
dehydrogenase subunit 2 [Arabidopsis thaliana]
GI:1766048; contains Pfam profile PF00180 dehydrogenase,
isocitrate/isopropylmalate family
Length = 294
Score = 81.8 bits (193), Expect = 3e-16
Identities = 45/129 (34%), Positives = 76/129 (58%)
Frame = +1
Query: 142 IGPEITVAVQKIFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNANKIGLKGPLMT 321
I +T AV ++ +A + P+ +E ++G + + + +DS+ NK+ L G +
Sbjct: 8 IDSNVTNAVHQVMDAMQAPVYFETY---IIKGKNMNH-LTWEVVDSIRKNKVCLNGRVNN 63
Query: 322 PVGKGYRSLNLALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIV 501
+ G RKE DL+A++ C +L G + ++NVD+V IRENTEGEY+G EHE+V
Sbjct: 64 SLCGG-------ARKELDLFASLVDCFNLNGQPSRHENVDIVVIRENTEGEYAGREHEVV 116
Query: 502 DGVVQSIKL 528
GV++S ++
Sbjct: 117 PGVIESFQV 125
>At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}
Length = 409
Score = 37.5 bits (83), Expect = 0.006
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 20/155 (12%)
Frame = +1
Query: 79 RAGAAQYSTGVRKVTLIPGHGIGPE-ITVA---VQKI-------FEAAKVPIEWEEVDVT 225
R AA + L+PG GIGPE I+VA +QK F+ ++P+ +D+
Sbjct: 36 RCAAASPGKKRYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFKEMPVGGAALDLV 95
Query: 226 AVRGPDGKFGIPQKAIDSVNANKIGLKGPLMTPVGKGYR--SLNLALRKEFDLYANVRPC 399
V P+ F K D++ IG G K R LR++ ++AN+RP
Sbjct: 96 GVPLPEETF-TAAKLSDAILLGAIG--GYKWDKNEKHLRPEMALFYLRRDLKVFANLRPA 152
Query: 400 KSLEGI-------KTLYDNVDVVTIRENTEGEYSG 483
L + K + + VD++ +RE T G Y G
Sbjct: 153 TVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFG 187
>At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}; EST gb|F14478 comes from this gene
Length = 404
Score = 36.3 bits (80), Expect = 0.013
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 20/142 (14%)
Frame = +1
Query: 118 VTLIPGHGIGPE-ITVA---VQKI-------FEAAKVPIEWEEVDVTAVRGPDGKFGIPQ 264
+TL+PG GIGPE I+VA +QK F+ ++P +D+ V P+ +
Sbjct: 46 ITLLPGDGIGPEVISVAKNVLQKAGFLQGLEFDFQEMPFGGAALDLVGVPLPE-ETSTAA 104
Query: 265 KAIDSVNANKIGLKGPLMTPVGKGYRSLN--LALRKEFDLYANVRPCKSLEGI------- 417
K D++ IG G K R L +R++ +++AN+RP L +
Sbjct: 105 KQSDAILLGAIG--GYKWDKNEKHLRPEMGLLNIRRDLNVFANLRPATVLPQLVDASTLK 162
Query: 418 KTLYDNVDVVTIRENTEGEYSG 483
K + VD++ +RE T G Y G
Sbjct: 163 KEVAQGVDMMIVRELTGGIYFG 184
>At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to
3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB:P29102
SP|P29102 from [Brassica napus]
Length = 405
Score = 35.9 bits (79), Expect = 0.017
Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 21/156 (13%)
Frame = +1
Query: 79 RAGAAQYSTGVRK--VTLIPGHGIGPEITVAVQKIFEAA-----------KVPIEWEEVD 219
R A S G ++ +TL+PG GIGPE+ + + + A ++PI +D
Sbjct: 30 RVRCAVASPGKKRYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALD 89
Query: 220 VTAVRGPDGKFGIPQKAIDSVNANKI-GLKGPLMTPVGKGYRSLNLALRKEFDLYANVRP 396
+ V P+ +++ D+V I G K + + L L +R ++AN+RP
Sbjct: 90 LVGVPLPEETISAAKES-DAVLLGAIGGYKWDNNEKHLRPEKGL-LQIRAALKVFANLRP 147
Query: 397 CKSLEGI-------KTLYDNVDVVTIRENTEGEYSG 483
L + + + + VD++ +RE T G Y G
Sbjct: 148 ATVLPQLVDASTLKREVAEGVDLMVVRELTGGIYFG 183
>At5g05520.1 68418.m00599 outer membrane OMP85 family protein
contains Pfam profile PF01103: outer membrane protein,
OMP85 family
Length = 524
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 286 ANKIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRPCKSLEGIKTLY 429
A G+ G + P G GY+S + + F L N+ P SL G L+
Sbjct: 345 ALNFGIAGGITFPWGSGYKSRASCVPERFFLGGNISPVCSLGGPSALW 392
>At3g10960.1 68416.m01321 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 579
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = -3
Query: 443 TSTLSYSVLIPSKLLQGLTLAYKSNSFLRAKLSDL*PLPTGVIRGPFKPILLAFTESIAF 264
+ ++SY + + ++GL + S RAKL+ L P P + + LAF
Sbjct: 176 SGSISYRTALAAVFIEGLIFLFISAIGFRAKLAKLVPKPVRISSSAGIGLFLAFIGLQNN 235
Query: 263 WGIPNLPSGPLTAVT 219
GI + P T VT
Sbjct: 236 QGIGLVGYSPSTLVT 250
>At5g49980.1 68418.m06189 transport inhibitor response protein,
putative E3 ubiquitin ligase SCF complex F-box subunit;
similar to F-box containing protein TIR1 GI:13249030
from [Populus tremula x Populus tremuloides]
Length = 619
Score = 23.8 bits (49), Expect(2) = 3.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 305 FKPILLAFTESIAFWGIPNLPSGPLTAVTST 213
FKPI+L + FW + ++ L AV +T
Sbjct: 353 FKPIILNCHKLQVFWALDSICDEGLQAVAAT 383
Score = 23.0 bits (47), Expect(2) = 3.1
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -3
Query: 485 IPEYSPSVFSLIVTTSTLSYS 423
+PEY P++F + ++L++S
Sbjct: 324 MPEYLPAIFPVCANLTSLNFS 344
>At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profile:
PF05669 SOH1
Length = 196
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 270 RFLGDTEFAIWTPNSCYIHFLPFDRYF 190
RFL + EF N YIH+L +RYF
Sbjct: 31 RFLLELEFIQCLANPTYIHYLAQNRYF 57
>At4g36195.1 68417.m05150 serine carboxypeptidase S28 family protein
contains Pfam PF05577: Serine carboxypeptidase S28
Length = 488
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = -3
Query: 467 SVFSLIVTTSTLSYSVLIPSKLLQGLTLAYK 375
S+F+++++ STLS +L P ++ GLT + K
Sbjct: 11 SIFAILLSLSTLSNGLLQPRRISHGLTESSK 41
>At3g28880.1 68416.m03605 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 762
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +1
Query: 238 PDGKFGIPQKAIDSVNANKIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRPC 399
P K P S N N+ LK P++ + K S ++ +EFD Y + C
Sbjct: 613 PQPKAQPPPPLTASYNNNQRQLKHPVLETLTKIRNSTSVFFLREFDFYQSYETC 666
>At1g53000.1 68414.m05999 cytidylyltransferase family contains Pfam
profile: PF02348 cytidylyltransferase
Length = 290
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 409 EGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEA 543
E ++ L DVV N +G+ IE EI+DGVV++++ +T +A
Sbjct: 124 EALEKLEKKYDVVV---NIQGDEPLIEPEIIDGVVKALQ-VTPDA 164
>At5g25310.1 68418.m03003 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 334
Score = 27.9 bits (59), Expect = 4.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 255 TEFAIWTPNSCYIHFLPF 202
T+F + PN Y++FLPF
Sbjct: 42 TKFRTYDPNQAYVYFLPF 59
>At4g36630.2 68417.m05198 expressed protein
Length = 950
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -3
Query: 302 KPILLAFTESIAFWGIPNL 246
+ +LL+ +ESIAF G+PNL
Sbjct: 82 RELLLSLSESIAFHGLPNL 100
>At4g36630.1 68417.m05199 expressed protein
Length = 519
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -3
Query: 302 KPILLAFTESIAFWGIPNL 246
+ +LL+ +ESIAF G+PNL
Sbjct: 82 RELLLSLSESIAFHGLPNL 100
>At1g77490.1 68414.m09024 L-ascorbate peroxidase, thylakoid-bound
(tAPX) identical to thylakoid-bound ascorbate peroxidase
GB:CAA67426 [Arabidopsis thaliana]
Length = 426
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/25 (48%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = -3
Query: 242 SGPLTAVTS-TSSHSIGTLAASKIF 171
S P+ A++S TS HS+G++A+S +F
Sbjct: 29 SSPVVALSSSTSPHSLGSVASSSLF 53
>At1g07500.1 68414.m00803 expressed protein ; expression supported
by MPSS
Length = 74
Score = 27.5 bits (58), Expect = 6.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 521 MDCTTPSTISCSIPEYSP 468
M CTTP+ C IP Y P
Sbjct: 20 MGCTTPTRDDCRIPAYPP 37
>At4g03175.1 68417.m00434 protein kinase family protein contains
similarity to Swiss-Prot:P51566 protein kinase AFC1
[Arabidopsis thaliana]
Length = 139
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 244 GKFGIPQKAIDSVNANKIGLKGPLMTPVGKGYRSLNLALRKEFDLY 381
G+ P +A+ + A + + GP+ T + K + + KE+DLY
Sbjct: 31 GEVLFPNEAVAMILARIVAVLGPIETEMLKKGQETHKYFTKEYDLY 76
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 334 GYRSLNLALRKEFDLYANVRPCKSLEGIKTLYDNV 438
G R NL LR+E +++AN++ K L IK ++ +
Sbjct: 1675 GLRDNNLRLRRELEMFANLKG-KLLTDIKNGFERI 1708
>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
contains Pfam profile: PF00628 PHD-finger
Length = 1189
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 534 RDQLDGLHDPVDDLVLDTGILT 469
RD++ L DP DD V+ TG++T
Sbjct: 633 RDEVIQLRDPDDDTVVKTGLVT 654
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.136 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,331,102
Number of Sequences: 28952
Number of extensions: 227425
Number of successful extensions: 713
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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