Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0633
         (708 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BGX7 Cluster: Chromosome undetermined scaffold_107, w...    38   0.32 
UniRef50_Q9PPP6 Cluster: Unique hypothetical; n=1; Ureaplasma pa...    35   2.3  
UniRef50_Q7RLA0 Cluster: Putative uncharacterized protein PY0264...    33   5.2  
UniRef50_Q7P7X8 Cluster: Macrolide-efflux protein; n=3; Fusobact...    33   6.9  
UniRef50_A4VF66 Cluster: Putative uncharacterized protein; n=1; ...    33   6.9  
UniRef50_Q8X1N2 Cluster: Integral membrane protein; n=1; Blumeri...    33   6.9  

>UniRef50_A0BGX7 Cluster: Chromosome undetermined scaffold_107,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_107,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 859

 Score = 37.5 bits (83), Expect = 0.32
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
 Frame = -1

Query: 483 VLTQSRFVSFQKYSANI*LCICVIYSLYFSKFTS*LTVYLVLNNHWPHLCDMSCLMKNSY 304
           +LT  +  SFQ+   N+ L +  I  + F K+     V++ L N W     +  L+ N Y
Sbjct: 312 ILTIVQLNSFQESEDNVSLALLEIAQIIF-KYLLISQVFIYLLNLWNTYFSLEFLLANKY 370

Query: 303 KLISRVERSIWFKQQFCNIARERFKAKTCEKI-LLQKKKHFI-NQLF 169
           K   R+ R +   QQ      ++ K+   E+I  LQ   H I NQ F
Sbjct: 371 KQYERLMRDLDVDQQTSKTILKQTKSYELEEIKYLQLFDHLISNQHF 417


>UniRef50_Q9PPP6 Cluster: Unique hypothetical; n=1; Ureaplasma
           parvum|Rep: Unique hypothetical - Ureaplasma parvum
           (Ureaplasma urealyticum biotype 1)
          Length = 146

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = -1

Query: 681 KFVGLEYHCLNCNKYYFFQSNQIVVLN-GFNIDLFRYRKYVYEHILTLIS---KFCSIIY 514
           KF+G+            F +N I+ LN G+N  L  Y+KY+   ILT IS    F +IIY
Sbjct: 21  KFIGVFISIFLAGWLISFITNLILALNYGYNEKLLNYKKYLDFTILTCISFLMLFITIIY 80

Query: 513 LI 508
           L+
Sbjct: 81  LL 82


>UniRef50_Q7RLA0 Cluster: Putative uncharacterized protein PY02646;
            n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein PY02646 - Plasmodium yoelii yoelii
          Length = 1230

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +2

Query: 389  NLEKYNEYMTQIHSQ-ILAEYFWKLTNRDCVKTAILFSFNFIK*IMEQNLLISVSICSYT 565
            +L+K  +Y  QI S  I    FW   +   +K+ ILF+ NF+  I+  +  I  +I +Y 
Sbjct: 975  SLDKLIKYNGQIESSSIYFSSFWNYFSN--IKSGILFNKNFVSNILIYSNQIVKNIFNYI 1032

Query: 566  YFLYLNKSILNPF 604
              L  NKS +  F
Sbjct: 1033 KILKRNKSFIKLF 1045


>UniRef50_Q7P7X8 Cluster: Macrolide-efflux protein; n=3;
           Fusobacterium nucleatum|Rep: Macrolide-efflux protein -
           Fusobacterium nucleatum subsp. vincentii ATCC 49256
          Length = 406

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
 Frame = -1

Query: 642 KYYFFQSNQIVVLNGF-NIDLFRYRKYVY-------EHILTLISKFCSIIYLIKLKLNKM 487
           K  F  ++ ++ L G  +I LFRY  Y+Y       + ++ +I+ F ++  LI      +
Sbjct: 284 KLLFILNSSLMCLGGLLSIILFRYNHYIYFTIFIFFQFLIGMITTFVNVP-LISSFQRSV 342

Query: 486 AVLTQSRFVSFQKYSANI*LCICVIYSLYFSKFTS*LTVYLVLN 355
            +  QSRF S   + +   + + ++Y+ Y S +      Y++ N
Sbjct: 343 GIEYQSRFFSILSFFSGGLIPLGILYAGYLSSYIGADVTYIIDN 386


>UniRef50_A4VF66 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 173

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -1

Query: 663 YHCLNCNKYYFFQSNQIVVLNGFNIDLFRYRKYVYEHILTLISKFCSIIYLIKLKL 496
           YH L    +Y F    ++   GFN+D F Y     E IL +  K  S I L  L++
Sbjct: 62  YHLLTIFTFYIFSGTCLIKFFGFNLDSFIYLNKKCE-ILLVAKKIHSFIILYNLQI 116


>UniRef50_Q8X1N2 Cluster: Integral membrane protein; n=1; Blumeria
           graminis|Rep: Integral membrane protein - Blumeria
           graminis
          Length = 420

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
 Frame = -1

Query: 615 IVVLNGFNIDLFRYRKYVYEHILTLISKF---CSIIYLIKLKLNKMAV---LTQSRFVSF 454
           I++  G ++ L  +R  +  H L  +S +   C I+Y+I + L K+++     +    ++
Sbjct: 69  ILIKTGTHLGLDTHRVDITPHYLVKLSCYTFTCEILYIITIALTKLSIGFFFLRLTTRNY 128

Query: 453 QKYSANI*LCICVIYSLYFSKFT 385
           QK+  N  + I  I S+ +  FT
Sbjct: 129 QKHVINFTIAIVSILSIIYISFT 151


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,126,794
Number of Sequences: 1657284
Number of extensions: 10448064
Number of successful extensions: 24994
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24983
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)