Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0633
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0796 + 23224357-23224427,23225714-23225810,23226335-232271...    30   1.6  
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209...    30   2.1  
01_06_1238 + 35646647-35646932,35647333-35647950,35648732-356490...    29   4.8  
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379...    28   8.4  

>12_02_0796 +
           23224357-23224427,23225714-23225810,23226335-23227146,
           23227593-23227619,23227620-23229624
          Length = 1003

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 182 IKCFFFCNNIFSQVLALNRSRAMLQNCCLNQID 280
           IKC    NN+ S+++   RS  + ++CC  Q D
Sbjct: 353 IKCALLMNNLGSRIITTTRSVTIAKSCCSPQHD 385


>12_02_0795 +
           23217463-23217684,23218296-23219155,23220001-23220929,
           23221184-23221968
          Length = 931

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 182 IKCFFFCNNIFSQVLALNRSRAMLQNCC 265
           I+C  F NN  S+++   R+ A+ ++CC
Sbjct: 378 IRCALFVNNCGSRIMTTTRNMAIAKSCC 405


>01_06_1238 +
           35646647-35646932,35647333-35647950,35648732-35649032,
           35649137-35649416,35649715-35649822,35650088-35650366,
           35650805-35650963
          Length = 676

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 666 EYHCLNCNKYYFFQSNQIVVLNGFNIDLFRYRKYVYE 556
           EYH L    Y++ Q +  +V      +L+ ++KY  E
Sbjct: 482 EYHVLRLYDYFYHQEHLFIVTELLRANLYEFQKYNQE 518


>05_04_0206 +
           19034259-19035462,19036870-19037045,19037752-19037975,
           19038133-19038914,19039337-19039494
          Length = 847

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 207 LLQKKKHFINQLFEWVKLN*SSIEN 133
           L+  +K +IN L+ W+KLN   IE+
Sbjct: 594 LMSYQKEYINALYSWLKLNLIPIES 618


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,687,218
Number of Sequences: 37544
Number of extensions: 243835
Number of successful extensions: 485
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)