Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0633
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31372| Best HMM Match : Arm (HMM E-Value=0)                         29   4.9  
SB_30132| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   4.9  
SB_21865| Best HMM Match : DUF1010 (HMM E-Value=1.5)                   28   6.5  
SB_29735| Best HMM Match : Kunitz_BPTI (HMM E-Value=2.7)               28   6.5  
SB_29616| Best HMM Match : Orthopox_F14 (HMM E-Value=1.2)              28   6.5  
SB_33311| Best HMM Match : RIO1 (HMM E-Value=0)                        28   8.5  

>SB_31372| Best HMM Match : Arm (HMM E-Value=0)
          Length = 656

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -1

Query: 681 KFVGLEYHCLNCNKYYFFQSNQIVVLNGFNIDLFRYRK-YVYEHILTLISKFCSIIYLIK 505
           KF+ +   CL+   Y   +S  I++ +G   +L R  K Y YE +L   S+   ++ +  
Sbjct: 278 KFLAIVTDCLHVLAYGNQESKLIILASGGPAELVRIMKTYTYEKLLFTTSRVLKVLSVD- 336

Query: 504 LKLNKMAVL 478
              NKMA++
Sbjct: 337 -TDNKMAIV 344


>SB_30132| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 355

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 398 KYNEYMTQIHSQILAEYFWKLTNRDCVKTAILFS-FNFIK*IMEQNLLISVSICSYTYFL 574
           KY ++MT    +I+  Y W L +  C  +  LFS F F+K      +  S SI  YT+F 
Sbjct: 144 KYQQWMTPRTIKIMVVYIW-LQSLICATSTFLFSKFEFLKFEHICTVDWSYSI-GYTFFF 201

Query: 575 YLNKSILNPF 604
            +    L PF
Sbjct: 202 VVTFFFL-PF 210


>SB_21865| Best HMM Match : DUF1010 (HMM E-Value=1.5)
          Length = 359

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/72 (19%), Positives = 33/72 (45%)
 Frame = -1

Query: 666 EYHCLNCNKYYFFQSNQIVVLNGFNIDLFRYRKYVYEHILTLISKFCSIIYLIKLKLNKM 487
           EY C+ C+       + + +       +  YRKY Y     + S   S + + ++ L ++
Sbjct: 79  EYCCIECHYIESIAVSSVAISRASFYRVSLYRKYRYTEYRYIESIVISSVAISRVSLYRV 138

Query: 486 AVLTQSRFVSFQ 451
           ++  + R+V ++
Sbjct: 139 SLYRKYRYVEYR 150


>SB_29735| Best HMM Match : Kunitz_BPTI (HMM E-Value=2.7)
          Length = 211

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 113 YQIKRTCNYKDKCRVLC 63
           Y ++RTC  KD CR +C
Sbjct: 101 YAVRRTCGDKDDCRKIC 117


>SB_29616| Best HMM Match : Orthopox_F14 (HMM E-Value=1.2)
          Length = 171

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 113 YQIKRTCNYKDKCRVLC 63
           Y ++RTC  KD CR +C
Sbjct: 37  YAVRRTCGDKDDCRKIC 53


>SB_33311| Best HMM Match : RIO1 (HMM E-Value=0)
          Length = 490

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 276 IWFKQQFCNIARERFKAKTCEKILLQKK 193
           +W +++ CN+ R +    +C ++LL KK
Sbjct: 301 LWAEKEMCNLCRMQKVGLSCPRVLLLKK 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,463,619
Number of Sequences: 59808
Number of extensions: 325774
Number of successful extensions: 618
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)