Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0633
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC026301-1|AAK68897.1|  280|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF016450-7|AAB65986.1|  323|Caenorhabditis elegans Serpentine re...    28   5.7  
AY008133-1|AAG32086.1|  363|Caenorhabditis elegans heterotrimeri...    27   9.9  
AF077536-9|AAK31414.1|  363|Caenorhabditis elegans G protein, al...    27   9.9  

>AC026301-1|AAK68897.1|  280|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.6 protein.
          Length = 280

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/62 (25%), Positives = 34/62 (54%)
 Frame = +2

Query: 386 VNLEKYNEYMTQIHSQILAEYFWKLTNRDCVKTAILFSFNFIK*IMEQNLLISVSICSYT 565
           +N ++    M Q + QI   +F K+ + + +K  +    NF+  I  +N+++ ++  S+T
Sbjct: 223 INFKRQPRDMFQYNLQIRKCFFHKVCSYEFMKIFV----NFLSAIFSENVILILNNLSFT 278

Query: 566 YF 571
           YF
Sbjct: 279 YF 280


>AF016450-7|AAB65986.1|  323|Caenorhabditis elegans Serpentine
           receptor, class t protein70 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 467 DLLVSKSILLIFDCVSASYIRYTFLNLL 384
           ++L +  +LL F C+++SY+ Y F+  L
Sbjct: 169 EILANLEVLLSFACLASSYVAYLFMAYL 196


>AY008133-1|AAG32086.1|  363|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 648 CNKYYFFQSNQIVVLNGF-NIDLFRYRKYVYEHIL 547
           C K   F+  +I+ +NGF ++D   +R  +Y +I+
Sbjct: 38  CGKSTIFKQMKIIHMNGFSDLDYVNFRYLIYSNIM 72


>AF077536-9|AAK31414.1|  363|Caenorhabditis elegans G protein, alpha
           subunit protein 11 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 648 CNKYYFFQSNQIVVLNGF-NIDLFRYRKYVYEHIL 547
           C K   F+  +I+ +NGF ++D   +R  +Y +I+
Sbjct: 38  CGKSTIFKQMKIIHMNGFSDLDYVNFRYLIYSNIM 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,334,881
Number of Sequences: 27780
Number of extensions: 274974
Number of successful extensions: 664
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)