Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0633
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   5.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.6  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 243 VQCCKIVA*TK*IFQPSI*VCMNSSLNTTCHISVANDY 356
           +QCC + + +    +P    C NS  N TC  S++N Y
Sbjct: 143 LQCCGVHSLSDYNDKPIPASCCNSPENNTC--SISNSY 178


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 413 YIRYTFLNLLASSQFIW 363
           YI +TFL LL +   IW
Sbjct: 55  YILFTFLALLGNGLVIW 71


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 422 IHSQILAEYFWKLTNRDCVKTA 487
           +H Q++  YF +  + D  KTA
Sbjct: 264 LHKQLMTRYFLERMSNDLGKTA 285


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 422 IHSQILAEYFWKLTNRDCVKTA 487
           +H Q++  YF +  + D  KTA
Sbjct: 264 LHKQLMTRYFLERMSNDLGKTA 285


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 404 NEYMTQIHSQILAEYFWKLTNRDCVKT 484
           N ++   +S      FW+LT R C K+
Sbjct: 355 NPFIYAFYSADFRLAFWRLTCRKCFKS 381


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 618 QIVVLNGFNIDLFRYRKYVYEHILTLI 538
           Q+V +    + +F   KYV EH+L  +
Sbjct: 142 QLVFMGIVELIMFTVNKYVGEHLLMTV 168


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 383 LVNLEKYNEYMTQIHSQILAEY 448
           +VN ++  E    +H QI+A Y
Sbjct: 224 IVNKDRRGELFYYMHQQIMARY 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,752
Number of Sequences: 438
Number of extensions: 3379
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)