Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0633
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51830.1 68416.m05684 phosphoinositide phosphatase family pro...    27   9.2  
At2g31710.1 68415.m03870 expressed protein                             27   9.2  
At2g04680.1 68415.m00478 DC1 domain-containing protein contains ...    27   9.2  

>At3g51830.1 68416.m05684 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain ; Contains nonconsensus AT/AA
           splice site at intron 7
          Length = 588

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 633 FFQSNQIVVLNGFNIDLFRYRKYVYEHILTLISKFCSIIYLIKLKLNK 490
           F +S QIV +NGF   L + R      I  L  +   + Y  +LK+NK
Sbjct: 243 FVESEQIVEINGFKFSLLQVR----GSIPLLWEQIVDLSYKPRLKINK 286


>At2g31710.1 68415.m03870 expressed protein
          Length = 105

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 615 IVVLNGFNIDLFRYRKYVYEHILTLISKFCSII 517
           I +L GFN DL      +  H LTL+S F +++
Sbjct: 20  IAILYGFNNDLLPGSTTLSPHSLTLLSGFLAVV 52


>At2g04680.1 68415.m00478 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 41  PAVFGLSDITRDIYLCNYRSVLF 109
           P+V  LSD   D+YLC+++   F
Sbjct: 632 PSVLKLSDTKVDVYLCSFKCAYF 654


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,915,641
Number of Sequences: 28952
Number of extensions: 229905
Number of successful extensions: 469
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)