Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0632
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    31   0.13 
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.1  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    27   3.7  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    26   6.5  

>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 226 PTLVKLVVPKGLNQPDMVIGKEKEEYLISKFK 321
           PTLV  +VP+GLN+ D     E E+ +++  K
Sbjct: 782 PTLVAYIVPQGLNKDDFDSATESEDIVVNGLK 813


>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +3

Query: 129 KKLRETTSITDLGEQTSNSKEDALXXXXXXXXXXXGEVGGPKGPEPTRYGDWERKGRVSD 308
           +K+   TS+  L + T N     L              GG  GPE TR  D+E   +V D
Sbjct: 42  EKVHGRTSVCSLEKATPNDIAQFLAEIHPDVVIFAAGAGGKGGPERTRAVDYEGAIKVYD 101


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 57  QQPPIEKENESVKKPESKRLSEFRKKLRETTSITDLG 167
           Q PP E+E     K E + + E + +L+   S+ ++G
Sbjct: 310 QLPPAERERVERGKQEKRAVEERKNQLKSPFSVANIG 346


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 60  QPPIEKENESVKKPE-SKRLSEFRKKLRETTSITDLGEQTSNSKED 194
           Q PIE E  SV     +KR+  F KK ++   + ++    SNS  D
Sbjct: 15  QNPIEGELGSVIVEHLTKRIRNFTKKKQKILKLEEIAASDSNSLND 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,445
Number of Sequences: 5004
Number of extensions: 51494
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)