Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0632
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0412 + 2944652-2944977,2945406-2945517,2945569-2945670           35   0.059
08_02_1574 + 27959064-27959216,27959344-27959436,27959969-27960145     30   2.2  
01_01_0321 - 2584332-2584661,2584776-2584883,2584987-2585070,258...    29   2.9  
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42...    29   3.9  
10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169           29   5.1  

>06_01_0412 + 2944652-2944977,2945406-2945517,2945569-2945670
          Length = 179

 Score = 35.1 bits (77), Expect = 0.059
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +3

Query: 234 GEVGGPKGPEPTRY 275
           GE+GGP+GPEPTRY
Sbjct: 97  GEIGGPRGPEPTRY 110


>08_02_1574 + 27959064-27959216,27959344-27959436,27959969-27960145
          Length = 140

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 75  KENESVKKPESKRLSEFRKKLRETTSITDLGEQTSNSKE 191
           KEN  V+K E +R+ + +KKL +  +  D G   ++ KE
Sbjct: 45  KENVYVQKMERERMEKRKKKLEKEKAEADKGNPAASDKE 83


>01_01_0321 -
           2584332-2584661,2584776-2584883,2584987-2585070,
           2585162-2585221,2585322-2585421,2585504-2585906,
           2586183-2586480,2587526-2587711
          Length = 522

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 139 EKLHQSLILVNKLQIPRKMLCLLGPTILTPTLVKLVV 249
           E++ +S      L++P + +CL GP  L+  L++L V
Sbjct: 166 EQIRRSSHSFENLKLPERKICLSGPNKLSEELIRLTV 202


>03_01_0049 +
           418957-419040,419599-419796,419918-420040,420172-420209,
           420334-420502,421115-424273,424367-424485,424915-425116
          Length = 1363

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +3

Query: 12  LKLNNARICLSHYYSQQPPIEKENESVKKPESKRLSEFRKKLRETTSITDLGEQTSNSK 188
           LKL N R   S  Y  +   +K  E +++  +  LSE R+KL  + S+   G QTS ++
Sbjct: 607 LKLLNFR---SQIYELEEKFQKSQEELEQ-RNLELSELRQKLDSSHSMAGEGVQTSGAR 661


>10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169
          Length = 627

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 151 QSLILVNKLQIPRKMLCLLGPTILTPTLVKLVVPKGLNQPDMVIGKEKEEYLISKFKI 324
           Q L L+  + I    +C+    +  P L+ LV+P+G   PD  IG  K    +  F +
Sbjct: 399 QELKLLESIDIEWGSVCIPPDIVHLPHLIHLVIPEGTGLPD-GIGNLKSLITLRSFDL 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,273,123
Number of Sequences: 37544
Number of extensions: 263849
Number of successful extensions: 566
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)