Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0632
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26791| Best HMM Match : DUF1674 (HMM E-Value=6.3e-20)               56   2e-08
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)            30   2.3  
SB_51677| Best HMM Match : DUF327 (HMM E-Value=0.89)                   29   3.0  
SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0)                       28   9.1  

>SB_26791| Best HMM Match : DUF1674 (HMM E-Value=6.3e-20)
          Length = 112

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +3

Query: 69  IEKENESVKKPESKRLSEFRKKLRETTSITDLGEQTSNSKE-DALXXXXXXXXXXXGEVG 245
           I++ + ++ +  S+  S+     + + + TD        KE D             GE  
Sbjct: 31  IQRGSVTLSQQFSRSFSDKTHNAKSSDAKTDGESSVEEEKEPDPFAPFPDDVNPETGERN 90

Query: 246 GPKGPEPTRYGDWERKGRVSDF 311
           GP+GPEPTRYGDWERKGR  DF
Sbjct: 91  GPRGPEPTRYGDWERKGRCIDF 112


>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
          Length = 1682

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = +3

Query: 72  EKENESVKKPESKRLSEFRKKLRETTSITDLGEQTSNSK 188
           E E+E+ ++P++   S+ R+K+R+  +   LGE+T  ++
Sbjct: 699 ESEDENEEEPDTPSKSKGRRKIRKLLTDEKLGEETKKAR 737


>SB_51677| Best HMM Match : DUF327 (HMM E-Value=0.89)
          Length = 655

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 318 EFRNQILFLFFPNHHIWLVQALWDHQLHQCW 226
           E RN I+F      H+ LV  L+D Q++QC+
Sbjct: 348 EQRNGIVFYEDDKRHLKLVGKLYDQQIYQCY 378


>SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0)
          Length = 839

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 733 VVLNEIVHVTNDSTKKLKWFKVCLKCLAFYLS 638
           VV+  +++  NDS +K+ W     +CL F+ S
Sbjct: 431 VVMPVLLNYFNDSRQKIAWVGSITQCLTFFAS 462


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,490,171
Number of Sequences: 59808
Number of extensions: 327371
Number of successful extensions: 779
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)