Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0632
         (740 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC104649-1|AAI04650.1|  108|Homo sapiens chromosome 6 open readi...    54   5e-07
BC018085-1|AAH18085.1|  108|Homo sapiens chromosome 6 open readi...    54   5e-07
AL583856-1|CAH70444.1|  108|Homo sapiens chromosome 6 open readi...    54   5e-07
L27841-1|AAA60120.1| 2024|Homo sapiens pericentriol material 1 p...    32   1.9  
BC133052-1|AAI33053.1| 1859|Homo sapiens PCM1 protein protein.         32   1.9  

>BC104649-1|AAI04650.1|  108|Homo sapiens chromosome 6 open reading
           frame 57 protein.
          Length = 108

 Score = 54.0 bits (124), Expect = 5e-07
 Identities = 21/25 (84%), Positives = 22/25 (88%)
 Frame = +3

Query: 237 EVGGPKGPEPTRYGDWERKGRVSDF 311
           E GGP+GPEPTRYGDWERKGR  DF
Sbjct: 84  EKGGPRGPEPTRYGDWERKGRCIDF 108


>BC018085-1|AAH18085.1|  108|Homo sapiens chromosome 6 open reading
           frame 57 protein.
          Length = 108

 Score = 54.0 bits (124), Expect = 5e-07
 Identities = 21/25 (84%), Positives = 22/25 (88%)
 Frame = +3

Query: 237 EVGGPKGPEPTRYGDWERKGRVSDF 311
           E GGP+GPEPTRYGDWERKGR  DF
Sbjct: 84  EKGGPRGPEPTRYGDWERKGRCIDF 108


>AL583856-1|CAH70444.1|  108|Homo sapiens chromosome 6 open reading
           frame 57 protein.
          Length = 108

 Score = 54.0 bits (124), Expect = 5e-07
 Identities = 21/25 (84%), Positives = 22/25 (88%)
 Frame = +3

Query: 237 EVGGPKGPEPTRYGDWERKGRVSDF 311
           E GGP+GPEPTRYGDWERKGR  DF
Sbjct: 84  EKGGPRGPEPTRYGDWERKGRCIDF 108


>L27841-1|AAA60120.1| 2024|Homo sapiens pericentriol material 1
           protein.
          Length = 2024

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 72  EKENESVKKPESK--RLSEFRKKLRETTSITDLGEQTSNSKEDAL 200
           E ENE    P  K  +L+E RK+L E   +    EQTS+   DA+
Sbjct: 478 ESENEGHLNPSEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAV 522


>BC133052-1|AAI33053.1| 1859|Homo sapiens PCM1 protein protein.
          Length = 1859

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 72  EKENESVKKPESK--RLSEFRKKLRETTSITDLGEQTSNSKEDAL 200
           E ENE    P  K  +L+E RK+L E   +    EQTS+   DA+
Sbjct: 477 ESENEGHLNPSEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAV 521


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,137,346
Number of Sequences: 237096
Number of extensions: 1652153
Number of successful extensions: 7416
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7416
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)