Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0632
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003141-9|AAM48550.1|   89|Caenorhabditis elegans Hypothetical ...    62   4e-10
U28412-9|AAK71403.2|  251|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z70783-1|CAA94852.2|  765|Caenorhabditis elegans Hypothetical pr...    32   0.37 
U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U40941-4|AAA81709.1|  771|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U40941-3|AAM51502.1|  730|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AF003141-9|AAM48550.1|   89|Caenorhabditis elegans Hypothetical
           protein W02D3.12 protein.
          Length = 89

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 25/26 (96%), Positives = 25/26 (96%)
 Frame = +3

Query: 234 GEVGGPKGPEPTRYGDWERKGRVSDF 311
           GEVGGP GPEPTRYGDWERKGRVSDF
Sbjct: 64  GEVGGPAGPEPTRYGDWERKGRVSDF 89


>U28412-9|AAK71403.2|  251|Caenorhabditis elegans Hypothetical
           protein T19C3.7 protein.
          Length = 251

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +3

Query: 21  NNARICLSHYYSQQPPIEKENESVKKPESKRLSEFRKKLRETTSITDLGEQT 176
           NN RI ++   + Q  IE EN  V+    K L E R+K RE  ++    E+T
Sbjct: 87  NNGRIDVAELPAGQRVIEVENNEVRDKYKKTLYEIRRKCRELQNLGAEDEET 138


>Z70783-1|CAA94852.2|  765|Caenorhabditis elegans Hypothetical
           protein ZK856.1 protein.
          Length = 765

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
 Frame = +1

Query: 67  RSKKKMKV*KNLSQNDYLSLEKN*EKLHQSLILVNKLQIPRKMLCLLGPTILTPTLVKLV 246
           +S+++ KV  NL     LSLE N EK H+S++ + +L++   ++ +L  T  T TL +L 
Sbjct: 664 KSQQRGKV--NLIGRLQLSLEANAEKEHESIVALRELRVQEGIVKIL-KTRKTYTLAQLT 720

Query: 247 -----VPKGLNQPDMVIGKEKEEYLI 309
                + K L  P+  I KE+ ++LI
Sbjct: 721 MELVEILKPLFIPNRKIIKEQIDWLI 746


>U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical
           protein F41C3.2 protein.
          Length = 499

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 475 FSTGYFCTIQYFLLYYTMKERNGTKVNLTFITMLSFCVT 359
           FS  Y   +   ++ Y +  R+G K      +MLSF  T
Sbjct: 98  FSAAYIAPLPSIIILYFLTNRSGVKTTFLICSMLSFLST 136


>U40941-4|AAA81709.1|  771|Caenorhabditis elegans Hypothetical
           protein F35C8.7a protein.
          Length = 771

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 736 QVVLNEIVHVTNDSTKK-LKWFKVCLKC 656
           +V+L  I H    S  K +KWF +CLKC
Sbjct: 583 RVLLEYIDHKLGKSQNKAVKWFLMCLKC 610


>U40941-3|AAM51502.1|  730|Caenorhabditis elegans Hypothetical
           protein F35C8.7b protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 736 QVVLNEIVHVTNDSTKK-LKWFKVCLKC 656
           +V+L  I H    S  K +KWF +CLKC
Sbjct: 542 RVLLEYIDHKLGKSQNKAVKWFLMCLKC 569


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,547,578
Number of Sequences: 27780
Number of extensions: 281325
Number of successful extensions: 845
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)