Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0632
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   4.0  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 294 LFFPNHHIWLVQAL 253
           +F P+H +WLV  L
Sbjct: 1   MFIPSHQVWLVGLL 14


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 294 LFFPNHHIWLVQAL 253
           +F P+H +WLV  L
Sbjct: 1   MFIPSHQVWLVGLL 14


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 9   ALKLNNARICLSHYYSQQPP-IEKENESVKKPESKRLSEFRKKLRETT 149
           ++  N+ R   S Y  ++P      NE++ +P SKR  +  KK +  T
Sbjct: 33  SISRNSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKKKKSKT 80


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 9   ALKLNNARICLSHYYSQQPP-IEKENESVKKPESKRLSEFRKKLRETT 149
           ++  N+ R   S Y  ++P      NE++ +P SKR  +  KK +  T
Sbjct: 33  SISRNSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKKKKSKT 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,655
Number of Sequences: 438
Number of extensions: 3845
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)