Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0632
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67490.1 68418.m08511 expressed protein                             58   6e-09
At5g49670.1 68418.m06150 hypothetical protein                          27   9.9  

>At5g67490.1 68418.m08511 expressed protein
          Length = 108

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 21/26 (80%), Positives = 25/26 (96%)
 Frame = +3

Query: 234 GEVGGPKGPEPTRYGDWERKGRVSDF 311
           GE+GGP+GPEPTRYGDWE++GR SDF
Sbjct: 83  GEIGGPRGPEPTRYGDWEQRGRCSDF 108


>At5g49670.1 68418.m06150 hypothetical protein 
          Length = 1184

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 66   PIEKENESVKKPESKRLSEFRKKLRETTSITDLGEQ 173
            PI+KE+ + KKP SK++   R  +R+   I D+ E+
Sbjct: 947  PIKKESSTPKKPGSKKVGRIRFGIRKL--IFDIEEE 980


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,334,940
Number of Sequences: 28952
Number of extensions: 244507
Number of successful extensions: 653
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)