Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0629
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.4  
AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esteras...    22   4.3  
AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esteras...    22   4.3  
AJ850289-1|CAH64509.1|  533|Tribolium castaneum putative esteras...    22   4.3  
AJ850288-1|CAH64508.1|  510|Tribolium castaneum putative esteras...    22   4.3  
AJ850287-1|CAH64507.1|  509|Tribolium castaneum putative esteras...    22   4.3  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   9.8  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 612 IDNQPAP*CFSLKFSSSKRSPYI 544
           + NQ +  CFSLK  + K  P++
Sbjct: 517 LGNQNSEMCFSLKLKNKKLPPFL 539


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 130 PSQFTILLIRNNHTVLSLASSVELDNGI*NLIPSERIARIQCK 2
           P   ++ L +NN   L L+ + E +    NL  +E++ +  CK
Sbjct: 295 PQDLSMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQLRKYLCK 337


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 130 PSQFTILLIRNNHTVLSLASSVELDNGI*NLIPSERIARIQCK 2
           P   ++ L +NN   L L+ + E +    NL  +E++ +  CK
Sbjct: 187 PQDLSMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQLRKYLCK 229


>AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 229 NEFSSFPCYFYKIRFE 182
           N+ SS P YFY++  E
Sbjct: 401 NKTSSVPIYFYRMSIE 416


>AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 229 NEFSSFPCYFYKIRFE 182
           N+ SS P YFY++  E
Sbjct: 401 NKTSSVPIYFYRMSIE 416


>AJ850289-1|CAH64509.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 229 NEFSSFPCYFYKIRFE 182
           N+ SS P YFY++  E
Sbjct: 401 NKTSSVPIYFYRMSIE 416


>AJ850288-1|CAH64508.1|  510|Tribolium castaneum putative esterase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 229 NEFSSFPCYFYKIRFE 182
           N+ SS P YFY++  E
Sbjct: 401 NKTSSVPIYFYRMSIE 416


>AJ850287-1|CAH64507.1|  509|Tribolium castaneum putative esterase
           protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 229 NEFSSFPCYFYKIRFE 182
           N+ SS P YFY++  E
Sbjct: 400 NKTSSVPIYFYRMSIE 415


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 133 KPSQFTILLIRNNHTVLSLASSVE 62
           KP+ F++L      TVLSL ++ E
Sbjct: 71  KPALFSVLCEIKEKTVLSLRNTQE 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,855
Number of Sequences: 336
Number of extensions: 3528
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)