Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0629
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             157   1e-38
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)             133   1e-31
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)              129   2e-30
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   7e-29
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         57   1e-08
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         56   3e-08
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         49   4e-06
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         46   3e-05
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          43   3e-04
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.032
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.043
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         35   0.074
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            32   0.52 
SB_4342| Best HMM Match : KA1 (HMM E-Value=0.53)                       29   3.7  
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  157 bits (380), Expect = 1e-38
 Identities = 76/137 (55%), Positives = 89/137 (64%)
 Frame = +2

Query: 266 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPE 445
           L+F+A   +D       VT KV  D+ IG    G +++GLFG T PKT  NF  LA K +
Sbjct: 8   LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQ 66

Query: 446 GEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAG 625
           G GYK S FHRVIKNFMIQ             SIYG+ F+DENF LKHYG GWL MANAG
Sbjct: 67  GFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAG 126

Query: 626 KDTNGSQFFITTVKTPW 676
           K+TNGSQF+ITT+KT W
Sbjct: 127 KNTNGSQFYITTIKTSW 143


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =  133 bits (322), Expect = 1e-31
 Identities = 77/155 (49%), Positives = 94/155 (60%), Gaps = 18/155 (11%)
 Frame = +2

Query: 266 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFG-------------KTVPK 406
           L F+AS+ +    K P VT KV FD+ IG +  G I IGLF              +++  
Sbjct: 12  LFFLASSAA----KDPIVTKKVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIG 67

Query: 407 TTENFFQL-----AQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDE 571
           T   +F        +  +G GYK S FHRVI++FMIQ            +SIYG++F DE
Sbjct: 68  TNFRYFDTYYCCTIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADE 127

Query: 572 NFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPW 676
           NFKL+HYGAGWLSMANAGKDTNGSQFFITTVKTPW
Sbjct: 128 NFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPW 162


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score =  129 bits (311), Expect = 2e-30
 Identities = 64/121 (52%), Positives = 77/121 (63%)
 Frame = +2

Query: 314 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 493
           +V  +V FD+ IG+ + G IV+ L    VP T ENF  L    +G GYKGS FHR+I  F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193

Query: 494 MIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTP 673
           M Q            +SIYG +FEDENF LKH GAG LSMAN+G +TNGSQFF+TT KT 
Sbjct: 194 MCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTD 253

Query: 674 W 676
           W
Sbjct: 254 W 254


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score =  124 bits (299), Expect = 7e-29
 Identities = 69/134 (51%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = +2

Query: 311 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKN 490
           PK T+   FD++IG    G IV+ L    VPKT ENF  L    +G GYKGS FHRVI  
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58

Query: 491 FMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKT 670
           FM Q            +SIYG +F DENF LKH G G LSMANAG  TNGSQFF+ T KT
Sbjct: 59  FMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKT 118

Query: 671 PWFRWQTWLF-SVK 709
            W   +  +F SVK
Sbjct: 119 SWLDGKHVVFGSVK 132


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 24/45 (53%), Positives = 30/45 (66%)
 Frame = +2

Query: 542 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPW 676
           S+YG  FEDE+F + H   G + MAN G+ TNGSQF+IT    PW
Sbjct: 51  SVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPW 95


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 28/46 (60%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
 Frame = +2

Query: 542 SIYGERFEDENFK-LKHYGAGWLSMANAGKDTNGSQFFITTVKTPW 676
           SI+G  FEDE  + L+H     +SMANAG +TNGSQFFIT V TPW
Sbjct: 8   SIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPW 53


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = +2

Query: 611 MANAGKDTNGSQFFITTVKTPW 676
           MANAGKDTNGSQFFITTVKT W
Sbjct: 1   MANAGKDTNGSQFFITTVKTSW 22


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 25/41 (60%), Positives = 27/41 (65%)
 Frame = +2

Query: 542 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV 664
           SIYG  F DE F+ KH     LSMAN G +TNGSQFFI  V
Sbjct: 31  SIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFIIHV 71


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = +2

Query: 584 KHYGAGWLSMANAGKDTNGSQFFITTVKTP 673
           +H   G LSMAN+G +TNGSQFFITTV TP
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTP 217


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 22/36 (61%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +2

Query: 605 LSMANAGKDTNGSQFFITTVKTPWFRWQTWLF-SVK 709
           LSMANAG  TNGSQFF+ T KT W   +  +F SVK
Sbjct: 3   LSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVK 38


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = +2

Query: 359 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 538
           ++G I I L     P +T NF  LA    G  Y G++FHRVI  FM+Q            
Sbjct: 31  SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQGGGFDADMQQKD 87

Query: 539 RSIYGERFEDENFKLKHYGAGWLSMANAG-KDTNGSQFFI 655
                +   D      H   G L+MA    +D+  SQFFI
Sbjct: 88  TQAPIKNEADNGL---HNVRGTLAMARTQVRDSATSQFFI 124


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 35.5 bits (78), Expect = 0.043
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +2

Query: 554 ERFEDENFKL----KHYGAGWLSMANAGKDTNGSQFFITTVKTP 673
           E  +DE   L     H   G +SMAN G ++NGSQFFI   K P
Sbjct: 286 EELDDEALDLMGRCNHNARGTVSMANNGPNSNGSQFFICYGKQP 329


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 34.7 bits (76), Expect = 0.074
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +2

Query: 359 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 487
           ++G I I L+GK  PK   NF QL    EG  Y  + FHR++K
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIVK 50


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = +2

Query: 365 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHR 478
           G ++  LF   VPKT ENF  L    +G G        YKG  FHR
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


>SB_4342| Best HMM Match : KA1 (HMM E-Value=0.53)
          Length = 327

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 703 RKQPCLPSKPGCLNSCDEKLRSICVFACISHR*PTSTIVLQLEV 572
           R Q C+ + P  L  CD  L S+ V  C+S+R P    V  + +
Sbjct: 133 RVQRCVSNCPLYLTVCDMSLNSLRVQRCVSNRNPLYLTVCDMSL 176


>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 321 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 220
           VTL PL +S+    ++N +   A+VRV  I  SL
Sbjct: 38  VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,570,974
Number of Sequences: 59808
Number of extensions: 392228
Number of successful extensions: 664
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)