Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0626
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    26   0.35 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.3  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    23   3.3  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   4.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.4  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    22   4.4  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   4.4  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 476 PLKEVFVRNHGRAPLWSK*KCETNRRSTSSASIRSMKGRASIPDKPG 336
           P  E+ +R+ G    +   +C T  R T    + + KGR  I +  G
Sbjct: 181 PSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVG 227


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/25 (28%), Positives = 11/25 (44%)
 Frame = +3

Query: 255  WSWPRSWQIMHHVGVQREKDNVGLW 329
            W +P+ WQ+    G   +K     W
Sbjct: 1519 WEYPKCWQVDCKKGPDSDKQAFAAW 1543



 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +3

Query: 255  WSWPRSWQIMHHVGVQREKD 314
            W +P+ WQ+  + G   +K+
Sbjct: 2442 WEYPKCWQVDCNKGPDSDKE 2461


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 84  LIVTYNITPQSFILL*LSYWL 146
           L++ YNI  Q   +  +SYWL
Sbjct: 41  LLILYNIILQVLFVSFVSYWL 61


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 84  LIVTYNITPQSFILL*LSYWL 146
           L++ YNI  Q   +  +SYWL
Sbjct: 59  LLILYNIILQVLFVSFVSYWL 79


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 547 NISTEQMLYTESDLENSMDRIETINFHE 630
           NIST   LYT S   +  +     NF+E
Sbjct: 30  NISTSNYLYTPSSTIDLYNTSSVSNFNE 57


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 547 NISTEQMLYTESDLENSMDRIETINFHE 630
           NIST   LYT S   +  +     NF+E
Sbjct: 30  NISTSNYLYTPSSTIDLYNTSSVSNFNE 57


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 237 LIAFLRRHWISAFSW 193
           LIA L  HW+S +SW
Sbjct: 145 LIA-LGEHWLSRYSW 158


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 237 LIAFLRRHWISAFSW 193
           LIA L  HW+S +SW
Sbjct: 145 LIA-LGEHWLSRYSW 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,707
Number of Sequences: 336
Number of extensions: 3757
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)