Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0626
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973... 138 5e-33
09_04_0020 + 13837257-13837281,13837364-13837550,13837655-138377... 79 5e-15
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270... 44 2e-04
09_06_0344 - 22419152-22419250,22419460-22419554,22419952-224201... 42 5e-04
10_01_0245 + 2566400-2567584 30 1.6
04_01_0279 + 3743025-3745169 30 2.1
02_02_0053 + 6396442-6396921,6397027-6397122,6397232-6397345,639... 29 2.8
07_03_1780 - 29465873-29466130,29466236-29466335,29466473-294665... 29 3.7
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606... 29 4.9
03_01_0417 - 3197956-3198438,3198550-3200001,3200116-3200277,320... 28 6.5
07_03_1014 + 23304245-23304465,23304560-23304597,23304691-233049... 28 8.6
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13... 28 8.6
04_01_0490 - 6440176-6440448,6440785-6441074,6441156-6441304,644... 28 8.6
01_05_0762 + 24990915-24990970,24991076-24991592,24991676-249917... 28 8.6
01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165 28 8.6
>03_06_0716 -
35695158-35696795,35697075-35697288,35697290-35697372,
35697695-35697865
Length = 701
Score = 138 bits (333), Expect = 5e-33
Identities = 73/152 (48%), Positives = 96/152 (63%), Gaps = 5/152 (3%)
Frame = +1
Query: 226 ESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLD---CGIHPGLSGMDALP--FIDLIEAD 390
E DQL I PLGAG EVGRSC+ + FKG+ ++L C + L G +P + L+
Sbjct: 27 EGDQLIITPLGAGNEVGRSCVYMSFKGRTVLLSLGPCCLSSLLLGEGNVPPSSVFLLRHK 86
Query: 391 EVDLLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVSNISTEQML 570
+ L+ L L WF +T+FKGRVFMTHATKAIYR L+SDY+KVS +S E ML
Sbjct: 87 CSAIALIPFSILK----LLWFYLQTTFKGRVFMTHATKAIYRLLLSDYVKVSKVSVEDML 142
Query: 571 YTESDLENSMDRIETINFHEERDVPGCKFWAY 666
+ E D+ SMD+IE I+FH+ +V G +FW Y
Sbjct: 143 FDEQDILRSMDKIEVIDFHQTLEVNGIRFWCY 174
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 647 GVNFGLTNAGHVLGAAMF 700
G+ F AGHVLGAAMF
Sbjct: 168 GIRFWCYTAGHVLGAAMF 185
>09_04_0020 +
13837257-13837281,13837364-13837550,13837655-13837727,
13837769-13837804,13838161-13838281,13838399-13838472,
13838594-13838730,13839262-13839325,13839693-13839758,
13840061-13840130,13840206-13840310,13840840-13840981,
13841343-13841439,13841939-13842460
Length = 572
Score = 78.6 bits (185), Expect = 5e-15
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Frame = +1
Query: 253 LGAGQEVGRSCIMLEFKG-KKIMLDCGIHPGLSGMDALPFIDLIEAD-------EVDLLL 408
LGAGQEVG+SC+++ F G K++M DCG+H G P D + AD + ++
Sbjct: 8 LGAGQEVGKSCVVVTFGGGKRVMFDCGMHMGHRDSRRYPDFDRLLADGAADYTAAISCVV 67
Query: 409 VSHFHLDHSGALPWFLTKTSFKGRVFMTH 495
++HFHLDH GALP+F + G V+MT+
Sbjct: 68 ITHFHLDHIGALPYFTEVCGYHGPVYMTY 96
>02_04_0130 +
20025414-20025531,20026357-20026585,20026909-20027032,
20027441-20027497,20027613-20027804,20027882-20027959,
20028437-20028619,20028715-20028795,20029196-20029228,
20029448-20029513,20029591-20029683,20030106-20030231,
20030395-20030508,20030973-20031068,20031159-20031256,
20031416-20031831,20032025-20032473,20032810-20032905
Length = 882
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Frame = +1
Query: 238 LTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGI-HPGLSGMDA---LPFIDLIE--ADEVD 399
L + P+G E+G +C+++ + I++D G+ P +P I+ + +++
Sbjct: 81 LRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDFDEFGVQKIIPDTTFIKKWSHKIE 140
Query: 400 LLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDY 534
++++H H DH GALPW + +F + T + + + ++
Sbjct: 141 AVIITHGHEDHIGALPWVIPALDSSTPIFASSFTMELIKRRLKEF 185
>09_06_0344 -
22419152-22419250,22419460-22419554,22419952-22420108,
22420825-22420869,22421080-22421211,22421496-22421594,
22421690-22421785,22421968-22422149,22422242-22422494,
22422867-22422974,22423037-22423094,22423462-22423613,
22423698-22423792,22424172-22424287,22424369-22424495,
22424565-22424661,22424745-22424913,22425879-22426027
Length = 742
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/129 (21%), Positives = 51/129 (39%)
Frame = +1
Query: 244 IRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADEVDLLLVSHFH 423
+ PL G C +L G + +LDCG P + A +D +L+SH
Sbjct: 7 VTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDPSHLQPLAKV--APTIDAVLLSHAD 64
Query: 424 LDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVSNISTEQMLYTESDLENSMD 603
H GALP+ + V+ T + + DY ++ L+T D++ +
Sbjct: 65 TMHLGALPYAMKHLGLSAPVYATEPVFRLGILTLYDYFISRRQVSDFDLFTLDDIDAAFQ 124
Query: 604 RIETINFHE 630
+ + + +
Sbjct: 125 NVVRLKYSQ 133
>10_01_0245 + 2566400-2567584
Length = 394
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 412 SHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLV 525
+H H DH G P L + + G + M+ + I++W++
Sbjct: 259 THIHEDHDGLYPITLQEGTELGLIVMSRSCMQIWQWMI 296
>04_01_0279 + 3743025-3745169
Length = 714
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 358 ALPFIDLIEADEVDLLLVSHFH 423
+LP D EADE +LLLV+HFH
Sbjct: 186 SLPRRDGEEADEEELLLVAHFH 207
>02_02_0053 +
6396442-6396921,6397027-6397122,6397232-6397345,
6397723-6397791,6397891-6397965,6398262-6398336
Length = 302
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 397 DLLLVSHFHLDHSGALPWFL 456
+ L +SH HLDH G LP ++
Sbjct: 70 EFLFISHAHLDHIGGLPMYV 89
>07_03_1780 -
29465873-29466130,29466236-29466335,29466473-29466559,
29466682-29467000,29467097-29468567
Length = 744
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 285 HHVGVQREKDNVGLWHP 335
+HVG RE+DN GLW+P
Sbjct: 491 YHVGCMRERDN-GLWYP 506
>12_01_0991 -
10057736-10058249,10058412-10059241,10059266-10060633,
10061785-10062327,10066274-10066498,10066590-10066640
Length = 1176
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 407 NRRSTSSASIRSMKGRASIPDKPGWMPQSNIIFFPLNSNMMHDLPTSWPAPSGLIVN*SL 228
N S S+ IRS SIPD+ G M ++F N+ M +P+S+ L V
Sbjct: 549 NITSLSALDIRSCGFFGSIPDEIGRMASLEEVYFQGNNLMSTMIPSSFKNLCNLKVLDLR 608
Query: 227 SSAGTGSV 204
S+ TG +
Sbjct: 609 STNTTGDI 616
>03_01_0417 -
3197956-3198438,3198550-3200001,3200116-3200277,
3200351-3201133
Length = 959
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 346 SGMDALP---FIDLIEADEVDLLLVSHFHLDH 432
+G DA P FI +EADE+ L + FHL H
Sbjct: 307 AGSDARPYQGFIHKVEADEIFLKFDNQFHLAH 338
>07_03_1014 +
23304245-23304465,23304560-23304597,23304691-23304994,
23305104-23305314,23305529-23305546
Length = 263
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 404 RRSTSSASIRSMKGRASIPDKPGWMPQS 321
R++ SS++ S RA+ PD+P W P S
Sbjct: 38 RQAESSSARASFAVRAAAPDRPIWFPGS 65
>06_01_0007 +
130582-131544,132187-132264,132615-132732,133228-133271,
133389-133448,133536-133588,133671-133837,133963-134167,
134989-135046,135225-135281,135363-135608,135938-136002,
136090-136158,136238-136331,136467-136607,137159-137304,
137452-138110,138222-138335,138406-138560
Length = 1163
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 202 GTDPVPAEESDQLTIRPLGAGQEVGRSCIM--LEFKGKKIMLDCGIHPGLS 348
G +P E+ D ++ +G GR+C+M F GK+ ++ IH LS
Sbjct: 798 GFTKIPQEQLDFWSVSWVGIIARFGRACLMWLSSFDGKEHIVFVDIHASLS 848
>04_01_0490 -
6440176-6440448,6440785-6441074,6441156-6441304,
6441432-6441890,6441973-6442269,6442604-6443502,
6443793-6443827,6443984-6444078,6444184-6444247,
6446099-6446175,6446330-6446514
Length = 940
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -1
Query: 270 FLASSKWSYCQLIAFLRRHWISAFSWICSHFVYLQIFIYRDLTNSLITIR*NFVV 106
+L + L FL R I FS I VYL +F Y N TI N+++
Sbjct: 772 YLRERESGMSSLAYFLARDTIDHFSTIVKPIVYLSMFYY--FNNPRSTITDNYII 824
>01_05_0762 +
24990915-24990970,24991076-24991592,24991676-24991753,
24993678-24993743,24994819-24994943,24995414-24995612,
24995909-24996137,24996259-24996425,24996526-24996735,
24997245-24997355,24997436-24997612,24997826-24998284,
24998676-24998966
Length = 894
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 614 VSILSIEFSRSDSVYNICSVDMLLTLI 534
+ +L+I F+ VY+ICS D+ L L+
Sbjct: 192 IIVLTIPFNYHRKVYDICSADLKLELV 218
>01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165
Length = 648
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 174 KQNDYKSKKRH*SSACGGKRSIDNKTTWSWPR 269
++ DY+ K + ACG + W+WPR
Sbjct: 617 EKEDYEEKLKELEDACGPVHGGRARDIWTWPR 648
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,642,470
Number of Sequences: 37544
Number of extensions: 383770
Number of successful extensions: 827
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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