Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0626
(720 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59520| Best HMM Match : RMMBL (HMM E-Value=6.4e-18) 67 2e-11
SB_22166| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_59526| Best HMM Match : Lactamase_B (HMM E-Value=7.9e-12) 36 0.033
SB_27978| Best HMM Match : HycH (HMM E-Value=0.12) 35 0.058
SB_36073| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-27) 30 2.2
SB_18285| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_36071| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-27) 29 2.9
SB_33106| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_59520| Best HMM Match : RMMBL (HMM E-Value=6.4e-18)
Length = 415
Score = 66.9 bits (156), Expect = 2e-11
Identities = 28/49 (57%), Positives = 40/49 (81%), Gaps = 2/49 (4%)
Frame = +1
Query: 526 SDYIKVS--NISTEQMLYTESDLENSMDRIETINFHEERDVPGCKFWAY 666
SD ++++ NI+ E ML+TESDLE SMD+IET++FH+E++V G KFW Y
Sbjct: 34 SDLLRITPFNIAAEDMLFTESDLEKSMDKIETLHFHQEKEVGGIKFWCY 82
>SB_22166| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 577
Score = 40.3 bits (90), Expect = 0.002
Identities = 28/137 (20%), Positives = 60/137 (43%)
Frame = +1
Query: 238 LTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADEVDLLLVSH 417
+ + L + C +L+ + +LDCG + L M+ + I +VD +LVS
Sbjct: 5 IKLNVLSGAHDEAPLCYLLQVDEFRFLLDCGWNETLD-MEIMESIKR-HVQQVDAVLVSF 62
Query: 418 FHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVSNISTEQMLYTESDLENS 597
+ H G LP+ + K ++ T + + + D+ + S E +++ D++
Sbjct: 63 PDIYHMGGLPYLVGKCGLHCPIYTTIPVYKMGQMFMYDWYQCHQNSEEFDVFSLDDVDAV 122
Query: 598 MDRIETINFHEERDVPG 648
D+I + + + + G
Sbjct: 123 FDKIIQLKYSQTVSLKG 139
>SB_59526| Best HMM Match : Lactamase_B (HMM E-Value=7.9e-12)
Length = 282
Score = 35.9 bits (79), Expect = 0.033
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 274 GRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADEVDLLLVSHFHLDHSGALPWF 453
G SC++L + G M DCG G +I++ ++ + +SH H DH LP
Sbjct: 18 GASCVILWYNGSCWMFDCG-----EGTQTQLTKSVIKSSKITKIFISHLHGDHVFGLPGL 72
Query: 454 L 456
L
Sbjct: 73 L 73
>SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)
Length = 316
Score = 35.1 bits (77), Expect = 0.058
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 172 INKMTTNPRKGTDPVPAEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIM 318
+N+ T RKG+ P P ES+ L + G +E+G +C + KG K+M
Sbjct: 65 LNRADTLQRKGSYPPPPGESEILGLEVSGIVEELGSACNLGWRKGDKVM 113
>SB_36073| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-27)
Length = 305
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -2
Query: 290 MMHDLPTSWPAPSGLIVN*SLSSAGTGSVPFLGFVVILFIYKYSF 156
MM LP +W A L+V+ S V ILF+Y Y F
Sbjct: 121 MMTVLPITWKADQSLLVHKIYVSCAVALFLVFPLVFILFVYSYIF 165
>SB_18285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1094
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +1
Query: 187 TNPRKGTDPVPAEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALP 366
T P G P+ S L P G G + + E +G+ + +HPGL +D
Sbjct: 771 TGPISGMAPLSQANSSLLANSPAGHGDGAFSNRSVSEAQGEAVRSISAVHPGLD-VDVGQ 829
Query: 367 FIDLIEADEV 396
F+D ++ + +
Sbjct: 830 FLDGLQLNNL 839
>SB_36071| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-27)
Length = 310
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -2
Query: 290 MMHDLPTSWPAPSGLIVN*SLSSAGTGSVPFLGFVVILFIYKYSF 156
+M LP SW A L+V+ S V ILF+Y Y F
Sbjct: 127 VMTVLPISWKADQSLLVHKIYVSCAVALFLVFPLVFILFVYSYIF 171
>SB_33106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/15 (73%), Positives = 13/15 (86%), Gaps = 1/15 (6%)
Frame = +1
Query: 658 WAYQCWTC-TRSSHV 699
+AYQCW+C T SSHV
Sbjct: 46 FAYQCWSCTTSSSHV 60
>SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1496
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Frame = +1
Query: 205 TDPV-PA---EESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HP 339
TDP+ P+ SD + +P A Q++G+S ++L G ++L C HP
Sbjct: 385 TDPIMPSIARATSDHIATQPESANQDIGKSIVLL--TGSSLVLHCNATGHP 433
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,751,950
Number of Sequences: 59808
Number of extensions: 449516
Number of successful extensions: 1111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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