Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0626
(720 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC030988-1|AAH30988.1| 554|Homo sapiens CPSF3 protein protein. 278 1e-74
BC020211-1|AAH20211.1| 684|Homo sapiens cleavage and polyadenyl... 278 1e-74
AF171877-1|AAF00224.1| 684|Homo sapiens cleavage and polyadenyl... 278 1e-74
AC080162-3|AAY14858.1| 684|Homo sapiens unknown protein. 278 1e-74
BC011654-1|AAH11654.1| 684|Homo sapiens cleavage and polyadenyl... 275 9e-74
AK223487-1|BAD97207.1| 684|Homo sapiens cleavage and polyadenyl... 274 2e-73
AL139287-12|CAI23182.1| 308|Homo sapiens cleavage and polyadeny... 115 2e-25
AL139287-10|CAI23180.1| 379|Homo sapiens cleavage and polyadeny... 115 2e-25
AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and polyadenyl... 115 2e-25
AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and polyadenyl... 115 2e-25
CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein. 113 6e-25
BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and polyadenyl... 112 1e-24
AK023356-1|BAB14541.1| 278|Homo sapiens protein ( Homo sapiens ... 112 1e-24
AL139287-9|CAI23178.1| 401|Homo sapiens cleavage and polyadenyl... 108 2e-23
BC020199-1|AAH20199.1| 389|Homo sapiens CPSF3L protein protein. 106 9e-23
BC008041-1|AAH08041.1| 389|Homo sapiens CPSF3L protein protein. 106 9e-23
AL139287-11|CAI23181.1| 283|Homo sapiens cleavage and polyadeny... 106 9e-23
AF017269-1|AAB70268.1| 379|Homo sapiens 73 kDA subunit of cleav... 61 4e-09
AL139287-7|CAI23176.1| 514|Homo sapiens cleavage and polyadenyl... 59 1e-08
AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens ... 57 7e-08
BC070095-1|AAH70095.1| 782|Homo sapiens cleavage and polyadenyl... 47 8e-05
BC014624-1|AAH14624.1| 363|Homo sapiens elaC homolog 1 (E. coli... 31 5.5
AK223507-1|BAD97227.1| 363|Homo sapiens elaC homolog 1 variant ... 31 5.5
AK024822-1|BAB15021.1| 363|Homo sapiens protein ( Homo sapiens ... 31 5.5
AF308695-1|AAG24917.1| 363|Homo sapiens ELAC1 protein. 31 5.5
AB029151-1|BAA96799.1| 363|Homo sapiens D29 protein. 31 5.5
>BC030988-1|AAH30988.1| 554|Homo sapiens CPSF3 protein protein.
Length = 554
Score = 278 bits (682), Expect = 1e-74
Identities = 123/151 (81%), Positives = 137/151 (90%)
Frame = +1
Query: 214 VPAEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADE 393
+PAEESDQL IRPLGAGQEVGRSCI+LEFKG+KIMLDCGIHPGL GMDALP+IDLI+ E
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 394 VDLLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVSNISTEQMLY 573
+DLLL+SHFHLDH GALPWFL KTSFKGR FMTHATKAIYRWL+SDY+KVSNIS + MLY
Sbjct: 64 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLY 123
Query: 574 TESDLENSMDRIETINFHEERDVPGCKFWAY 666
TE+DLE SMD+IETINFHE ++V G KFW Y
Sbjct: 124 TETDLEESMDKIETINFHEVKEVAGIKFWCY 154
>BC020211-1|AAH20211.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa protein.
Length = 684
Score = 278 bits (682), Expect = 1e-74
Identities = 123/151 (81%), Positives = 137/151 (90%)
Frame = +1
Query: 214 VPAEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADE 393
+PAEESDQL IRPLGAGQEVGRSCI+LEFKG+KIMLDCGIHPGL GMDALP+IDLI+ E
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 394 VDLLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVSNISTEQMLY 573
+DLLL+SHFHLDH GALPWFL KTSFKGR FMTHATKAIYRWL+SDY+KVSNIS + MLY
Sbjct: 64 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLY 123
Query: 574 TESDLENSMDRIETINFHEERDVPGCKFWAY 666
TE+DLE SMD+IETINFHE ++V G KFW Y
Sbjct: 124 TETDLEESMDKIETINFHEVKEVAGIKFWCY 154
>AF171877-1|AAF00224.1| 684|Homo sapiens cleavage and
polyadenylation specificity factor 73 kDa subunit
protein.
Length = 684
Score = 278 bits (682), Expect = 1e-74
Identities = 123/151 (81%), Positives = 137/151 (90%)
Frame = +1
Query: 214 VPAEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADE 393
+PAEESDQL IRPLGAGQEVGRSCI+LEFKG+KIMLDCGIHPGL GMDALP+IDLI+ E
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 394 VDLLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVSNISTEQMLY 573
+DLLL+SHFHLDH GALPWFL KTSFKGR FMTHATKAIYRWL+SDY+KVSNIS + MLY
Sbjct: 64 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLY 123
Query: 574 TESDLENSMDRIETINFHEERDVPGCKFWAY 666
TE+DLE SMD+IETINFHE ++V G KFW Y
Sbjct: 124 TETDLEESMDKIETINFHEVKEVAGIKFWCY 154
>AC080162-3|AAY14858.1| 684|Homo sapiens unknown protein.
Length = 684
Score = 278 bits (682), Expect = 1e-74
Identities = 123/151 (81%), Positives = 137/151 (90%)
Frame = +1
Query: 214 VPAEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADE 393
+PAEESDQL IRPLGAGQEVGRSCI+LEFKG+KIMLDCGIHPGL GMDALP+IDLI+ E
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 394 VDLLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVSNISTEQMLY 573
+DLLL+SHFHLDH GALPWFL KTSFKGR FMTHATKAIYRWL+SDY+KVSNIS + MLY
Sbjct: 64 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLY 123
Query: 574 TESDLENSMDRIETINFHEERDVPGCKFWAY 666
TE+DLE SMD+IETINFHE ++V G KFW Y
Sbjct: 124 TETDLEESMDKIETINFHEVKEVAGIKFWCY 154
>BC011654-1|AAH11654.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa protein.
Length = 684
Score = 275 bits (675), Expect = 9e-74
Identities = 122/151 (80%), Positives = 136/151 (90%)
Frame = +1
Query: 214 VPAEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADE 393
+PAEESDQL IRPLGAGQEVGRSCI+LEFKG+KIMLDCGIHPGL GMDALP+IDLI+ E
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 394 VDLLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVSNISTEQMLY 573
+DLLL+SHFHLDH GALPWFL KTSFKGR FMTHATKAIYRWL+SDY+KVSNIS + MLY
Sbjct: 64 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLY 123
Query: 574 TESDLENSMDRIETINFHEERDVPGCKFWAY 666
TE+DLE SMD+IETINFH ++V G KFW Y
Sbjct: 124 TETDLEESMDKIETINFHGVKEVAGIKFWCY 154
>AK223487-1|BAD97207.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa variant
protein.
Length = 684
Score = 274 bits (673), Expect = 2e-73
Identities = 122/151 (80%), Positives = 136/151 (90%)
Frame = +1
Query: 214 VPAEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADE 393
+PAEESDQL IRPLGAGQEVGRSCI+LEFKG+KIMLDCGIHPGL GMDALP+IDLI+ E
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 394 VDLLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVSNISTEQMLY 573
+DLLL+SHFHLDH GALPWFL KTSFKGR FMTHATKAIYRWL+SDY+KVSNIS + MLY
Sbjct: 64 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLY 123
Query: 574 TESDLENSMDRIETINFHEERDVPGCKFWAY 666
TE+ LE SMD+IETINFHE ++V G KFW Y
Sbjct: 124 TETVLEESMDKIETINFHEVKEVAGIKFWCY 154
>AL139287-12|CAI23182.1| 308|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 308
Score = 115 bits (276), Expect = 2e-25
Identities = 54/143 (37%), Positives = 85/143 (59%), Gaps = 6/143 (4%)
Frame = +1
Query: 220 AEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIE----- 384
AE ++ + PLGAGQ+VGRSCI++ GK +MLDCG+H G + P I
Sbjct: 17 AETMPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRL 76
Query: 385 ADEVDLLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVS-NISTE 561
D +D +++SHFHLDH GALP+F + G ++MTH T+AI L+ DY K++ + E
Sbjct: 77 TDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGE 136
Query: 562 QMLYTESDLENSMDRIETINFHE 630
+T +++ M ++ ++ H+
Sbjct: 137 ANFFTSQMIKDCMKKVVAVHLHQ 159
>AL139287-10|CAI23180.1| 379|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 379
Score = 115 bits (276), Expect = 2e-25
Identities = 54/143 (37%), Positives = 85/143 (59%), Gaps = 6/143 (4%)
Frame = +1
Query: 220 AEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIE----- 384
AE ++ + PLGAGQ+VGRSCI++ GK +MLDCG+H G + P I
Sbjct: 5 AETMPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRL 64
Query: 385 ADEVDLLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVS-NISTE 561
D +D +++SHFHLDH GALP+F + G ++MTH T+AI L+ DY K++ + E
Sbjct: 65 TDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGE 124
Query: 562 QMLYTESDLENSMDRIETINFHE 630
+T +++ M ++ ++ H+
Sbjct: 125 ANFFTSQMIKDCMKKVVAVHLHQ 147
>AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 627
Score = 115 bits (276), Expect = 2e-25
Identities = 54/143 (37%), Positives = 85/143 (59%), Gaps = 6/143 (4%)
Frame = +1
Query: 220 AEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIE----- 384
AE ++ + PLGAGQ+VGRSCI++ GK +MLDCG+H G + P I
Sbjct: 25 AETMPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRL 84
Query: 385 ADEVDLLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVS-NISTE 561
D +D +++SHFHLDH GALP+F + G ++MTH T+AI L+ DY K++ + E
Sbjct: 85 TDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGE 144
Query: 562 QMLYTESDLENSMDRIETINFHE 630
+T +++ M ++ ++ H+
Sbjct: 145 ANFFTSQMIKDCMKKVVAVHLHQ 167
>AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 598
Score = 115 bits (276), Expect = 2e-25
Identities = 54/143 (37%), Positives = 85/143 (59%), Gaps = 6/143 (4%)
Frame = +1
Query: 220 AEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIE----- 384
AE ++ + PLGAGQ+VGRSCI++ GK +MLDCG+H G + P I
Sbjct: 18 AETMPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRL 77
Query: 385 ADEVDLLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVS-NISTE 561
D +D +++SHFHLDH GALP+F + G ++MTH T+AI L+ DY K++ + E
Sbjct: 78 TDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGE 137
Query: 562 QMLYTESDLENSMDRIETINFHE 630
+T +++ M ++ ++ H+
Sbjct: 138 ANFFTSQMIKDCMKKVVAVHLHQ 160
>CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein.
Length = 600
Score = 113 bits (272), Expect = 6e-25
Identities = 52/138 (37%), Positives = 84/138 (60%), Gaps = 6/138 (4%)
Frame = +1
Query: 235 QLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIE-----ADEVD 399
++ + PLGAGQ+VGRSCI++ GK +MLDCG+H G + P I D +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 400 LLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVS-NISTEQMLYT 576
+++SHFHLDH GALP+F + G ++MTH+T+AI L+ DY K++ + E +T
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHSTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 577 ESDLENSMDRIETINFHE 630
+++ M ++ ++ H+
Sbjct: 123 SQMIKDCMKKVVAVHLHQ 140
>BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 600
Score = 112 bits (270), Expect = 1e-24
Identities = 52/138 (37%), Positives = 83/138 (60%), Gaps = 6/138 (4%)
Frame = +1
Query: 235 QLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIE-----ADEVD 399
++ + PLGAGQ+VGRSCI++ GK +MLDCG+H G + P I D +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 400 LLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVS-NISTEQMLYT 576
+++SHFHLDH GALP+F + G ++MTH T+AI L+ DY K++ + E +T
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 577 ESDLENSMDRIETINFHE 630
+++ M ++ ++ H+
Sbjct: 123 SQMIKDCMKKVVAVHLHQ 140
>AK023356-1|BAB14541.1| 278|Homo sapiens protein ( Homo sapiens
cDNA FLJ13294 fis, clone OVARC1001232, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 278
Score = 112 bits (270), Expect = 1e-24
Identities = 52/138 (37%), Positives = 83/138 (60%), Gaps = 6/138 (4%)
Frame = +1
Query: 235 QLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIE-----ADEVD 399
++ + PLGAGQ+VGRSCI++ GK +MLDCG+H G + P I D +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 400 LLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVS-NISTEQMLYT 576
+++SHFHLDH GALP+F + G ++MTH T+AI L+ DY K++ + E +T
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 577 ESDLENSMDRIETINFHE 630
+++ M ++ ++ H+
Sbjct: 123 SQMIKDCMKKVVAVHLHQ 140
>AL139287-9|CAI23178.1| 401|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 401
Score = 108 bits (260), Expect = 2e-23
Identities = 50/114 (43%), Positives = 71/114 (62%), Gaps = 5/114 (4%)
Frame = +1
Query: 220 AEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIE----- 384
AE ++ + PLGAGQ+VGRSCI++ GK +MLDCG+H G + P I
Sbjct: 10 AETMPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRL 69
Query: 385 ADEVDLLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVS 546
D +D +++SHFHLDH GALP+F + G ++MTH T+AI L+ DY K++
Sbjct: 70 TDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIA 123
>BC020199-1|AAH20199.1| 389|Homo sapiens CPSF3L protein protein.
Length = 389
Score = 106 bits (254), Expect = 9e-23
Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Frame = +1
Query: 235 QLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIE-----ADEVD 399
++ + PLGAGQ+VGRSCI++ GK +MLDCG+H G + P I D +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 400 LLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVS 546
+++SHFHLDH GALP+F + G ++MTH T+AI L+ DY K++
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIA 111
>BC008041-1|AAH08041.1| 389|Homo sapiens CPSF3L protein protein.
Length = 389
Score = 106 bits (254), Expect = 9e-23
Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Frame = +1
Query: 235 QLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIE-----ADEVD 399
++ + PLGAGQ+VGRSCI++ GK +MLDCG+H G + P I D +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 400 LLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVS 546
+++SHFHLDH GALP+F + G ++MTH T+AI L+ DY K++
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIA 111
>AL139287-11|CAI23181.1| 283|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 283
Score = 106 bits (254), Expect = 9e-23
Identities = 50/131 (38%), Positives = 78/131 (59%), Gaps = 6/131 (4%)
Frame = +1
Query: 256 GAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIE-----ADEVDLLLVSHF 420
GAGQ+VGRSCI++ GK +MLDCG+H G + P I D +D +++SHF
Sbjct: 77 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 136
Query: 421 HLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVS-NISTEQMLYTESDLENS 597
HLDH GALP+F + G ++MTH T+AI L+ DY K++ + E +T +++
Sbjct: 137 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 196
Query: 598 MDRIETINFHE 630
M ++ ++ H+
Sbjct: 197 MKKVVAVHLHQ 207
>AF017269-1|AAB70268.1| 379|Homo sapiens 73 kDA subunit of cleavage
and polyadenylation specificity factor protein.
Length = 379
Score = 60.9 bits (141), Expect = 4e-09
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = +1
Query: 565 MLYTESDLENSMDRIETINFHEERDVPGCKFWAY 666
MLYTE+DLE SMD+IETINFHE ++V G KFW Y
Sbjct: 2 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCY 35
>AL139287-7|CAI23176.1| 514|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 514
Score = 59.3 bits (137), Expect = 1e-08
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = +1
Query: 220 AEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLS 348
AE ++ + PLGAGQ+VGRSCI++ GK +MLDCG+H G +
Sbjct: 13 AETMPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFN 55
>AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens
cDNA FLJ11877 fis, clone HEMBA1007087, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 499
Score = 56.8 bits (131), Expect = 7e-08
Identities = 21/38 (55%), Positives = 30/38 (78%)
Frame = +1
Query: 235 QLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLS 348
++ + PLGAGQ+VGRSCI++ GK +MLDCG+H G +
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFN 40
>BC070095-1|AAH70095.1| 782|Homo sapiens cleavage and
polyadenylation specific factor 2, 100kDa protein.
Length = 782
Score = 46.8 bits (106), Expect = 8e-05
Identities = 31/137 (22%), Positives = 64/137 (46%)
Frame = +1
Query: 238 LTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADEVDLLLVSH 417
+ + L QE C +L+ + +LDCG S MD + + ++D +L+SH
Sbjct: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFS-MDIIDSLRK-HVHQIDAVLLSH 62
Query: 418 FHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVSNISTEQMLYTESDLENS 597
H GALP+ + K ++ T + + + D + + + + L+T D++ +
Sbjct: 63 PDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAA 122
Query: 598 MDRIETINFHEERDVPG 648
D+I+ + F + ++ G
Sbjct: 123 FDKIQQLKFSQIVNLKG 139
>BC014624-1|AAH14624.1| 363|Homo sapiens elaC homolog 1 (E. coli)
protein.
Length = 363
Score = 30.7 bits (66), Expect = 5.5
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +1
Query: 274 GRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADEVDLLLVSHFHLDHSGALPWF 453
G S ++L +G+ + DCG G ++A + + ++H H DH LP
Sbjct: 20 GASAVVLRCEGECWLFDCG-----EGTQTQLMKSQLKAGRITKIFITHLHGDHFFGLPGL 74
Query: 454 LTKTSFKGRVFMTHATKAIY 513
L S + ++ IY
Sbjct: 75 LCTISLQSGSMVSKQPIEIY 94
>AK223507-1|BAD97227.1| 363|Homo sapiens elaC homolog 1 variant
protein.
Length = 363
Score = 30.7 bits (66), Expect = 5.5
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +1
Query: 274 GRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADEVDLLLVSHFHLDHSGALPWF 453
G S ++L +G+ + DCG G ++A + + ++H H DH LP
Sbjct: 20 GASAVVLRCEGECWLFDCG-----EGTQTQLMKSQLKAGRITKIFITHLHGDHFFGLPGL 74
Query: 454 LTKTSFKGRVFMTHATKAIY 513
L S + ++ IY
Sbjct: 75 LCTISLQSGSMVSKQPIEIY 94
>AK024822-1|BAB15021.1| 363|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21169 fis, clone CAS10938. ).
Length = 363
Score = 30.7 bits (66), Expect = 5.5
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +1
Query: 274 GRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADEVDLLLVSHFHLDHSGALPWF 453
G S ++L +G+ + DCG G ++A + + ++H H DH LP
Sbjct: 20 GASAVVLRCEGECWLFDCG-----EGTQTQLMKSQLKAGRITKIFITHLHGDHFFGLPGL 74
Query: 454 LTKTSFKGRVFMTHATKAIY 513
L S + ++ IY
Sbjct: 75 LCTISLQSGSMVSKQPIEIY 94
>AF308695-1|AAG24917.1| 363|Homo sapiens ELAC1 protein.
Length = 363
Score = 30.7 bits (66), Expect = 5.5
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +1
Query: 274 GRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADEVDLLLVSHFHLDHSGALPWF 453
G S ++L +G+ + DCG G ++A + + ++H H DH LP
Sbjct: 20 GASAVVLRCEGECWLFDCG-----EGTQTQLMKSQLKAGRITKIFITHLHGDHFFGLPGL 74
Query: 454 LTKTSFKGRVFMTHATKAIY 513
L S + ++ IY
Sbjct: 75 LCTISLQSGSMVSKQPIEIY 94
>AB029151-1|BAA96799.1| 363|Homo sapiens D29 protein.
Length = 363
Score = 30.7 bits (66), Expect = 5.5
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +1
Query: 274 GRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADEVDLLLVSHFHLDHSGALPWF 453
G S ++L +G+ + DCG G ++A + + ++H H DH LP
Sbjct: 20 GASAVVLRCEGECWLFDCG-----EGTQTQLMKSQLKAGRITKIFITHLHGDHFFGLPGL 74
Query: 454 LTKTSFKGRVFMTHATKAIY 513
L S + ++ IY
Sbjct: 75 LCTISLQSGSMVSKQPIEIY 94
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,235,057
Number of Sequences: 237096
Number of extensions: 2316600
Number of successful extensions: 3584
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3572
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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