Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0626
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132951-1|CAC44310.2| 707|Caenorhabditis elegans Hypothetical ... 215 2e-56
Z48334-7|CAB54223.2| 608|Caenorhabditis elegans Hypothetical pr... 109 2e-24
AF026215-4|AAB71322.1| 843|Caenorhabditis elegans Hypothetical ... 50 2e-06
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 29 2.5
AL132949-40|CAN99706.1| 329|Caenorhabditis elegans Hypothetical... 29 4.4
AL132949-39|CAB61094.1| 295|Caenorhabditis elegans Hypothetical... 29 4.4
Z79601-4|CAB01884.1| 210|Caenorhabditis elegans Hypothetical pr... 28 5.8
U68259-1|AAB16974.1| 69|Caenorhabditis elegans rab14-like prot... 28 5.8
U41270-5|AAA82442.2| 364|Caenorhabditis elegans Hypothetical pr... 28 5.8
>AL132951-1|CAC44310.2| 707|Caenorhabditis elegans Hypothetical
protein Y67H2A.1 protein.
Length = 707
Score = 215 bits (526), Expect = 2e-56
Identities = 91/150 (60%), Positives = 118/150 (78%), Gaps = 2/150 (1%)
Frame = +1
Query: 223 EESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADEVDL 402
+ SD L PLG+GQEVGRSC +LE+KGK++MLDCG+HPGL G+DALPF+D +E + +DL
Sbjct: 6 DNSDSLCFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIENIDL 65
Query: 403 LLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVSNIS--TEQMLYT 576
LL++HFHLDH GALPW L KT+F+G+ FMTHATKAIYR L+ DY+++S LYT
Sbjct: 66 LLITHFHLDHCGALPWLLQKTAFQGKCFMTHATKAIYRMLLGDYVRISKYGGPDRNQLYT 125
Query: 577 ESDLENSMDRIETINFHEERDVPGCKFWAY 666
E DLE SM +IETI+F E+++V G +FW Y
Sbjct: 126 EDDLEKSMAKIETIDFREQKEVNGIRFWPY 155
>Z48334-7|CAB54223.2| 608|Caenorhabditis elegans Hypothetical
protein F10B5.8 protein.
Length = 608
Score = 109 bits (262), Expect = 2e-24
Identities = 56/138 (40%), Positives = 79/138 (57%), Gaps = 6/138 (4%)
Frame = +1
Query: 235 QLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEA-----DEVD 399
++ I PLGAGQ+VGRSCI++ GK IM+DCG+H G P I D +D
Sbjct: 7 EIKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLD 66
Query: 400 LLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVS-NISTEQMLYT 576
+++SHFHLDH G+LP + G ++MT+ TKAI L+ DY KV +I E +T
Sbjct: 67 CVIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGETNFFT 126
Query: 577 ESDLENSMDRIETINFHE 630
D++N M ++ HE
Sbjct: 127 SDDIKNCMKKVVGCALHE 144
>AF026215-4|AAB71322.1| 843|Caenorhabditis elegans Hypothetical
protein F09G2.4 protein.
Length = 843
Score = 50.0 bits (114), Expect = 2e-06
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 4/135 (2%)
Frame = +1
Query: 238 LTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHP--GLSGMDAL-PFIDLIEADEVDLLL 408
+ ++ ++ G C +L+ G I+LDCG GL + L PFI I A +L
Sbjct: 5 IKLKVFSGAKDEGPLCYLLQVDGDYILLDCGWDERFGLQYFEELKPFIPKISA-----VL 59
Query: 409 VSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVSNISTEQM-LYTESD 585
+SH H G LP+ ++K V+ T + + + D + S++ E+ YT D
Sbjct: 60 ISHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMV-YSHLDVEEFEHYTLDD 118
Query: 586 LENSMDRIETINFHE 630
++ + +++E + +++
Sbjct: 119 VDTAFEKVEQVKYNQ 133
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical
protein F54E4.1 protein.
Length = 2948
Score = 29.5 bits (63), Expect = 2.5
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 2/162 (1%)
Frame = +1
Query: 154 VNEYL*INKMTTNPRKGTDPVPAEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGI 333
+ +Y+ + K T + E+ + P+G ++G+S +L+ K D
Sbjct: 333 LGKYIRVKKTKTKILNKLRKMMPEKHQETDSNPIGIRAQIGKSPSLLDIPTSKDNTD--- 389
Query: 334 HPGLSGMDALPFIDLIEADEVDLLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIY 513
H S A I A E D LLV F+ DH+ P+ + + K VF A K +
Sbjct: 390 HQETSFYLAA----TINA-ETDCLLVPSFN-DHNNQKPFSVHWLNNKELVFSVGAEKLLA 443
Query: 514 RWLVSDYIKV--SNISTEQMLYTESDLENSMDRIETINFHEE 633
++ D V SN E TES+ + + + H +
Sbjct: 444 EAVLLDLDAVTHSNDEPEDSSPTESEKKRDFEHENVRSEHSD 485
>AL132949-40|CAN99706.1| 329|Caenorhabditis elegans Hypothetical
protein Y53F4B.39b protein.
Length = 329
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +1
Query: 274 GRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADEVDLLLVSHFHLDHSGAL 444
G + +L KKI++D G + AL + ++ ++++H+H DH G +
Sbjct: 66 GTNTYLLGTGAKKILVDTGEPNVTEYISALKSVLASTNSHIEYIVITHWHGDHVGGI 122
>AL132949-39|CAB61094.1| 295|Caenorhabditis elegans Hypothetical
protein Y53F4B.39a protein.
Length = 295
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +1
Query: 274 GRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADEVDLLLVSHFHLDHSGAL 444
G + +L KKI++D G + AL + ++ ++++H+H DH G +
Sbjct: 32 GTNTYLLGTGAKKILVDTGEPNVTEYISALKSVLASTNSHIEYIVITHWHGDHVGGI 88
>Z79601-4|CAB01884.1| 210|Caenorhabditis elegans Hypothetical
protein K09A9.2 protein.
Length = 210
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 271 VGRSCIMLEFKGKKIMLDC 327
VG+SC++ +F KK M DC
Sbjct: 22 VGKSCLLHQFTEKKFMADC 40
>U68259-1|AAB16974.1| 69|Caenorhabditis elegans rab14-like
protein.
Length = 69
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 271 VGRSCIMLEFKGKKIMLDC 327
VG+SC++ +F KK M DC
Sbjct: 22 VGKSCLLHQFTEKKFMADC 40
>U41270-5|AAA82442.2| 364|Caenorhabditis elegans Hypothetical
protein AH9.4 protein.
Length = 364
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 400 LLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRW 519
LL+ + FH+ G +P + + K +F+ H+T A W
Sbjct: 63 LLMQAIFHITPKGEVPTVVLSSICKFGIFLIHSTSAFSVW 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,233,424
Number of Sequences: 27780
Number of extensions: 335726
Number of successful extensions: 833
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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