Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0626
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.54 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 476 PLKEVFVRNHGRAPLWSK*KCETNRRSTSSASIRSMKGRASIPDKPG 336
           P  E+ +R+ G    +   +C T  R T    + + KGR  I +  G
Sbjct: 161 PSGELHIRDVGPEDGYKTYQCRTKHRLTGETRLSATKGRLVITEPVG 207


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 225 GKRSIDNKTTWSWPRSWQIMHHVGVQREKDNVGLWHPS 338
           G+ S+ N +    PRS +      V+REK  + + +PS
Sbjct: 310 GRGSVHNGSNNGSPRSPESNSRCSVKREKIKISVSYPS 347


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = +1

Query: 448 WFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVSN--ISTEQMLYTESDLENSMDRIETIN 621
           WFL+     G V      K +Y  L+S+Y K+    ++T  +L     L+ S    + I+
Sbjct: 12  WFLSALVVHGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLS----QLID 67

Query: 622 FHEERDVPGCKFWAYQCW 675
            + +  +     W  Q W
Sbjct: 68  VNLKNQIMTTNLWVEQSW 85


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = +1

Query: 448 WFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVSN--ISTEQMLYTESDLENSMDRIETIN 621
           WFL+     G V      K +Y  L+S+Y K+    ++T  +L     L+ S    + I+
Sbjct: 12  WFLSALVVHGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLS----QLID 67

Query: 622 FHEERDVPGCKFWAYQCW 675
            + +  +     W  Q W
Sbjct: 68  VNLKNQIMTTNLWVEQSW 85


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 LEFKGKKIMLDCGIHPGL 345
           L  KGK I +  GIH G+
Sbjct: 574 LTHKGKPIRMRIGIHTGM 591


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 175 NKMTTNPRKGTDPVPAEESDQLTIRPLGAGQEVGRSCIML 294
           +KM T P K ++P+ A E  Q++ + L      G  C M+
Sbjct: 250 HKMLT-PIK-SEPIDAYEMHQISKKKLSPATPKGSKCSMI 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,893
Number of Sequences: 438
Number of extensions: 4252
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)