Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0626
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61010.2 68414.m06870 cleavage and polyadenylation specificit...   209   1e-54
At1g61010.1 68414.m06869 cleavage and polyadenylation specificit...   209   1e-54
At2g01730.1 68415.m00101 metallo-beta-lactamase family protein s...   100   8e-22
At5g63420.1 68418.m07962 metallo-beta-lactamase family protein         43   2e-04
At5g23880.1 68418.m02805 cleavage and polyadenylation specificit...    33   0.14 
At1g74700.1 68414.m08652 RNase Z identical to RNase Z (GI:209756...    30   1.3  
At2g28650.1 68415.m03483 exocyst subunit EXO70 family protein co...    28   5.4  
At2g04530.1 68415.m00459 RNase Z 97% identical to RNase Z (GI:20...    27   9.5  

>At1g61010.2 68414.m06870 cleavage and polyadenylation specificity
           factor, putative similar to cleavage and polyadenylation
           specificity factor 73 kDa subunit [Homo sapiens]
           SWISS-PROT:Q9UKF6
          Length = 693

 Score =  209 bits (511), Expect = 1e-54
 Identities = 88/161 (54%), Positives = 122/161 (75%)
 Frame = +1

Query: 184 TTNPRKGTDPVPAEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDAL 363
           +T+ ++   P+ + + DQL + PLGAG EVGRSC+ + F+GK I+ DCGIHP  SGM AL
Sbjct: 5   STSLKRREQPI-SRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAAL 63

Query: 364 PFIDLIEADEVDLLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKV 543
           P+ D I+   +D+LL++HFH+DH+ +LP+FL KT+F GRVFMTHATKAIY+ L++DY+KV
Sbjct: 64  PYFDEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKV 123

Query: 544 SNISTEQMLYTESDLENSMDRIETINFHEERDVPGCKFWAY 666
           S +S E ML+ E D+  SMD+IE I+FH+  +V G KFW Y
Sbjct: 124 SKVSVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCY 164



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 647 GVNFGLTNAGHVLGAAMF 700
           G+ F    AGHVLGAAMF
Sbjct: 158 GIKFWCYTAGHVLGAAMF 175


>At1g61010.1 68414.m06869 cleavage and polyadenylation specificity
           factor, putative similar to cleavage and polyadenylation
           specificity factor 73 kDa subunit [Homo sapiens]
           SWISS-PROT:Q9UKF6
          Length = 693

 Score =  209 bits (511), Expect = 1e-54
 Identities = 88/161 (54%), Positives = 122/161 (75%)
 Frame = +1

Query: 184 TTNPRKGTDPVPAEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDAL 363
           +T+ ++   P+ + + DQL + PLGAG EVGRSC+ + F+GK I+ DCGIHP  SGM AL
Sbjct: 5   STSLKRREQPI-SRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAAL 63

Query: 364 PFIDLIEADEVDLLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKV 543
           P+ D I+   +D+LL++HFH+DH+ +LP+FL KT+F GRVFMTHATKAIY+ L++DY+KV
Sbjct: 64  PYFDEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKV 123

Query: 544 SNISTEQMLYTESDLENSMDRIETINFHEERDVPGCKFWAY 666
           S +S E ML+ E D+  SMD+IE I+FH+  +V G KFW Y
Sbjct: 124 SKVSVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCY 164



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 647 GVNFGLTNAGHVLGAAMF 700
           G+ F    AGHVLGAAMF
Sbjct: 158 GIKFWCYTAGHVLGAAMF 175


>At2g01730.1 68415.m00101 metallo-beta-lactamase family protein
           simliar to SP|P79101 Cleavage and polyadenylation
           specificity factor, 73 kDa subunit (CPSF 73 kDa subunit)
           {Bos taurus}; contains Pfam profile PF00753:
           Metallo-beta-lactamase superfamily
          Length = 613

 Score =  100 bits (240), Expect = 8e-22
 Identities = 46/132 (34%), Positives = 79/132 (59%), Gaps = 6/132 (4%)
 Frame = +1

Query: 253 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEA-----DEVDLLLVSH 417
           LGAGQE+G+SC+++   GKKIM DCG+H G    +  P   LI       + +  ++++H
Sbjct: 8   LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITH 67

Query: 418 FHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVS-NISTEQMLYTESDLEN 594
           FH+DH GALP+F     + G ++M++ TKA+   ++ DY +V  +   E+ L+T + + N
Sbjct: 68  FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTTTHIAN 127

Query: 595 SMDRIETINFHE 630
            M ++  I+  +
Sbjct: 128 CMKKVIAIDLKQ 139


>At5g63420.1 68418.m07962 metallo-beta-lactamase family protein 
          Length = 911

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
 Frame = +1

Query: 238 LTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGI------HPGLSGMDALPFIDLIEA--DE 393
           L I P+G   E+G +C+++    + I++D GI       PG+  +  +P    I     +
Sbjct: 110 LRILPIGGLGEIGMNCMLVGNYDRYILIDAGIMFPDYDEPGIQKI--MPDTGFIRRWKHK 167

Query: 394 VDLLLVSHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYR 516
           ++ ++++H H DH GALPW +        +F +  T  + +
Sbjct: 168 IEAVVITHGHEDHIGALPWVIPALDPNTPIFASSFTMELIK 208


>At5g23880.1 68418.m02805 cleavage and polyadenylation specificity
           factor identical to cleavage and polyadenylation
           specificity factor [Arabidopsis thaliana]
           SWISS-PROT:Q9LKF9
          Length = 739

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 23/120 (19%), Positives = 51/120 (42%)
 Frame = +1

Query: 289 MLEFKGKKIMLDCGIHPGLSGMDALPFIDLIEADEVDLLLVSHFHLDHSGALPWFLTKTS 468
           ++   G   ++DCG +  L     L  +  + A  +D +L+SH    H GALP+ + +  
Sbjct: 22  LVSIDGFNFLIDCGWND-LFDTSLLEPLSRV-ASTIDAVLLSHPDTLHIGALPYAMKQLG 79

Query: 469 FKGRVFMTHATKAIYRWLVSDYIKVSNISTEQMLYTESDLENSMDRIETINFHEERDVPG 648
               V+ T     +    + D        ++  L+T  D++++   +  + + +   + G
Sbjct: 80  LSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDIDSAFQNVIRLTYSQNYHLSG 139


>At1g74700.1 68414.m08652 RNase Z identical to RNase Z (GI:20975609)
           [Arabidopsis thaliana]
          Length = 280

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 397 DLLLVSHFHLDHSGALPWFL 456
           D L +SH H+DH G LP ++
Sbjct: 48  DFLFISHSHMDHIGGLPMYV 67


>At2g28650.1 68415.m03483 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit
          Length = 573

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +1

Query: 454 LTKTSFKGRVFMTHATKAIYRWLVSD--YIKVSNISTEQMLYTESDLE---NSMDRIETI 618
           L K     R+ MTH +K  YR L S+  Y+   ++S      ++SD +   N+MD ++ I
Sbjct: 96  LVKAENLMRISMTHLSKEFYRILKSNRRYLDPESVSIRSSKASDSDSDSDSNTMDDLKMI 155


>At2g04530.1 68415.m00459 RNase Z 97% identical to RNase Z
           (GI:20975607) [Arabidopsis thaliana]; similar to RNase Z
           (GI:20975609) [Arabidopsis thaliana]; identical to cDNA
           RNase Z (At2g04530) GI:20975606
          Length = 354

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 403 LLVSHFHLDHSGALPWFL 456
           L ++H HLDH G LP ++
Sbjct: 119 LFITHAHLDHIGGLPMYV 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,307,167
Number of Sequences: 28952
Number of extensions: 316685
Number of successful extensions: 717
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)