Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0625
(756 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0) 252 2e-67
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 124 8e-29
SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07) 48 6e-06
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 48 6e-06
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0) 48 8e-06
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 44 2e-04
SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41) 42 5e-04
SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0) 40 0.003
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27) 39 0.005
SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05) 32 0.005
SB_2654| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_21263| Best HMM Match : Thioredoxin (HMM E-Value=0.00093) 37 0.020
SB_6126| Best HMM Match : Thioredoxin (HMM E-Value=0.021) 36 0.027
SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06) 35 0.082
SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019) 33 0.25
SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19) 31 1.3
SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_13486| Best HMM Match : DUF1530 (HMM E-Value=2.3) 29 3.1
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) 29 3.1
SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21) 28 7.1
SB_8164| Best HMM Match : rve (HMM E-Value=0.00069) 28 9.4
>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
Length = 308
Score = 252 bits (617), Expect = 2e-67
Identities = 116/231 (50%), Positives = 164/231 (70%), Gaps = 1/231 (0%)
Frame = +3
Query: 60 GLATVIQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDV 239
G V++ D+ F E+ NAGTKLVV DFTA+WC PC+ IAP + L K+ +AVFLK+DV
Sbjct: 7 GNVKVLELDSQFTAELTNAGTKLVVADFTASWCGPCKSIAPVYSGLSEKYKQAVFLKIDV 66
Query: 240 DRCADTASAQGVSAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYYGSDVAEEDEDNTVA 419
D C + A+ QGV+AMPTF F++N+ K+D + G + LE+ ++++ G D E+ V
Sbjct: 67 DVCQELAAKQGVTAMPTFQFFKNKVKVDEVRGADPKALEDAIKKWIG-DGEEDGAGCGVK 125
Query: 420 GHMDLITFITKSECECLNEADDHPLAQALTNDRGYLASYCDEQLIINISFNQLVKLHSIK 599
GH+DL ++I KS CECLNE ++HPL ALT G+L S CDEQL+I++SFNQ VKLHS+K
Sbjct: 126 GHVDLNSYINKSGCECLNEDNEHPLNDALTKGPGFLQSDCDEQLLISLSFNQPVKLHSMK 185
Query: 600 IKGPAD-KGPKSIKLFINQPRTLDFDQAAGYSSVQDLELTPSDLEGNPVPP 749
++ P D + PK +KLFINQ ++LDFD A + ++Q LELTP D++ + + P
Sbjct: 186 LQAPNDGQAPKVVKLFINQTKSLDFDSAENFQAIQTLELTPEDVQEDVIIP 236
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 124 bits (299), Expect = 8e-29
Identities = 55/104 (52%), Positives = 72/104 (69%)
Frame = +3
Query: 60 GLATVIQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDV 239
G V+++D+ F E+ AG++LVV+DFTATWC PC+ IAP F L KF VFLKVDV
Sbjct: 8 GNVIVVEDDSFFSVEIERAGSRLVVIDFTATWCGPCKSIAPVFTNLSMKFMDVVFLKVDV 67
Query: 240 DRCADTASAQGVSAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQ 371
D+C TA + G+ AMPTF FY N+ KID L G + LENK+++
Sbjct: 68 DQCQLTAESCGIRAMPTFHFYHNKAKIDELRGADPGALENKIKE 111
>SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 75 IQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLP-AKFPRAVFLKVDVD 242
I+ A F + + N KLVV+DF A WC PC++I P F+++ +F F K+DVD
Sbjct: 15 IEERAEFNSVINNTKDKLVVIDFYAEWCGPCRQIKPKFKKMALEEFKDVFFAKIDVD 71
>SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07)
Length = 438
Score = 48.4 bits (110), Expect = 6e-06
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +3
Query: 123 KLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDVD 242
++ +DFTATWC PC+ I P FE++ +F KVDVD
Sbjct: 12 EVAAIDFTATWCGPCRMIGPKFEEMAKEFKGVKCAKVDVD 51
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 48.4 bits (110), Expect = 6e-06
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +3
Query: 84 DAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFF----EQLPAKFPRAVFLKVDVDRCA 251
D++F++ +A G +++V+F A WC C+R+AP + E L P KVD
Sbjct: 545 DSNFKSGVA--GKDIMLVEFFAPWCGHCKRLAPEYETAAEALKKNDPPVPLAKVDCTEAG 602
Query: 252 -DTASAQGVSAMPTFIFYRN 308
DT S GVS PT +RN
Sbjct: 603 KDTCSKYGVSGYPTLKIFRN 622
>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 295
Score = 48.0 bits (109), Expect = 8e-06
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = +3
Query: 102 EMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRA---VFLKVDVDRCADTASAQG 272
E+ N G K +V+F A WC C+++AP +EQL + ++ + KVD D D S
Sbjct: 34 EVVN-GEKFALVEFYAPWCGHCKQLAPTYEQLGEAYTQSSDVIIAKVDADGDRDLGSRFD 92
Query: 273 VSAMPTFIFY-RNRTKIDRLEGG 338
V PT ++ + T + GG
Sbjct: 93 VKGFPTIKYFPKGSTTPEEYNGG 115
>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 81 NDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAV-FLKVDVDRCADT 257
N +F T++ A VVDF A WC PC R AP +EQL V KV+ ++
Sbjct: 439 NSKNFFTDVL-ASEDAWVVDFYAPWCGPCMRFAPKYEQLAKMLKGKVRAAKVNCEQDYGL 497
Query: 258 ASAQGVSAMPTFIFYRNRTK 317
S + + PT Y T+
Sbjct: 498 CSEANIHSYPTVRLYLGSTR 517
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +3
Query: 135 VDFTATWCPPCQRIAPFFEQLPAKF--PRAVFLKVDVDRCADTASAQGVSAMPTFIFYRN 308
VDF A WCPPC R+ P + + F F VD + + + PT I Y N
Sbjct: 307 VDFFAPWCPPCMRLLPEYRKAARSFVGKPVGFGTVDCTVHSQLCHQYNIRSYPTTILYNN 366
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 102 EMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKF-PRAVFLKVDVDRCADTASAQGVS 278
E+A K V V+F A WC C+++AP ++QL K+ A + +D A+ V
Sbjct: 396 EVARNKDKNVFVEFYAPWCGHCKQLAPIWDQLGEKYKDHADIVVAKMDSTANEVEGVKVH 455
Query: 279 AMPTFIFYRNRTKIDRLEGGNT 344
+ PT ++ + GG T
Sbjct: 456 SFPTIKYFPKEGEAVDYNGGRT 477
Score = 35.1 bits (77), Expect = 0.062
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = +3
Query: 108 ANAGTKLVVVDFTATWCPPCQRIAPFFEQLPA--KFPRAVFLKVDVDRCADTASAQ--GV 275
A A K V+V+F A WC C+ +AP + + K ++ VD A+T + V
Sbjct: 37 AVAANKHVLVEFYAPWCGHCKALAPEYAKAAGQLKSEKSEIKLAKVDATAETKLGEKFQV 96
Query: 276 SAMPTFIFYRNRTKIDRLEGGNT 344
PT F+++ K GG T
Sbjct: 97 QGYPTIKFFKD-GKPSEYAGGRT 118
>SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 42.3 bits (95), Expect = 4e-04
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Frame = +3
Query: 393 EEDEDNTVAGHMDLITFITKSECECLNEADDHPLAQALTN------DRGYLASYCDEQLI 554
+ ++ N L I +CLNEA++ + ++ S DE+L+
Sbjct: 18 QHEDPNERGNQFSLYQKIDLFRLQCLNEAEEGSGKDVFKSWDERLDTTKFVESDVDEELL 77
Query: 555 INISFNQLVKLHS-IKIKGPADKGPKSIKLFINQPRTLDFDQAAGYSSVQDLEL 713
NI F VKL + I I G + P +KLF N+P + FD AG + Q EL
Sbjct: 78 FNIPFTGSVKLKALIVIGGEGGEHPSEVKLFKNRP-AMTFDD-AGSEAEQSFEL 129
>SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)
Length = 271
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +3
Query: 120 TKLVVVDFTATWCPPCQRIAPFFEQLPAKF---PRAVFLKVDVDRCADTASAQGVSAMPT 290
T+ V+V F A WC C+ P +E+ F P VF K+D + D + V+ PT
Sbjct: 164 TEHVLVMFYAPWCGHCKNAKPKYEKAAETFKDQPNRVFAKLDCTKFGDVCDKEEVNGYPT 223
Query: 291 FIFYRNRTKIDRLEGGNTT 347
+Y + +G T
Sbjct: 224 LRYYLYGKFVVEYDGDRVT 242
>SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 153 WCPPCQRIAPFFEQLPAKFPRAVFL-KVDVDRCADTASAQGVSAMPTFIFYRNRTKIDRL 329
WC PC+ + P + + A+ V L KVD+D + A GV+A+PT I + I++
Sbjct: 2 WCNPCKVLTPRLDAIIAEQDGKVDLAKVDIDVMGELAFNFGVNAVPTVIGMKGGKVINKF 61
Query: 330 EG 335
EG
Sbjct: 62 EG 63
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +3
Query: 126 LVVVDFTATWCPPCQRIAPFFEQLPAKF----PRAVFLKVDVDRCADTASAQGVSAMPTF 293
+++V+F A WC C+ +AP + + K P F K+D +D A VS PT
Sbjct: 80 IILVEFYAPWCGHCKSLAPEYAKAAKKMKLNDPPVPFAKMDATVASDIAQRFDVSGYPTL 139
Query: 294 IFYRNRT 314
+R T
Sbjct: 140 KIFRKGT 146
Score = 33.1 bits (72), Expect = 0.25
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 99 TEMANAGTKLVVVDFTATWCPPCQRIAPFFE----QLPAKFPRAVFLKVDVDRCADTASA 266
TE+ N + L++V+F A WC C+++AP +E +L P VD ++ A
Sbjct: 187 TEVVNRES-LMLVEFFAPWCGHCKQLAPEYEKAAQELQKHDPPIPLAIVDATIESELAQK 245
Query: 267 QGVSAMPTFIFYR 305
V PT +R
Sbjct: 246 YEVQGYPTLKVFR 258
>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 362
Score = 39.5 bits (88), Expect = 0.003
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = +3
Query: 84 DAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFL-KVDVDRCADTA 260
D +F+ E+ N+ L +V+F A WC CQR+AP + + + V + +D TA
Sbjct: 86 DTNFEKEVLNS-KDLWLVEFFAPWCGHCQRLAPEWAKAATELKGKVKVGALDATVHTVTA 144
Query: 261 SAQGVSAMPTF-IF---YRNRTKIDRLEGGNT 344
S V PT +F +N ++ +GG T
Sbjct: 145 SRYQVQGYPTIKVFAAGIKNSHSVEDYQGGRT 176
>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
Length = 472
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = +3
Query: 81 NDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFE----QLPAKFPRAVFLKV--DVD 242
ND +F + + V+VDF A WC CQR++P F+ QL P F KV +D
Sbjct: 57 NDQNFNETIKK--NEYVLVDFYAPWCSDCQRLSPLFDTAALQLRDNNPSLRFAKVIYSID 114
Query: 243 RC 248
C
Sbjct: 115 EC 116
Score = 33.9 bits (74), Expect = 0.14
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Frame = +3
Query: 81 NDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKF----PRAVFL-KVDVD- 242
+D++F E A K V+VDF A WC C+++AP ++ + + +V L KVD
Sbjct: 140 DDSNF--EPAVQKHKFVLVDFYAPWCFHCKKMAPDYKDVAKELLILSHNSVRLAKVDCSA 197
Query: 243 ---RCADTASAQGVSAMPTFIFYRNRTKIDRLEGGN 341
T V +PT + + ++ EG N
Sbjct: 198 NNMATKKTCKKYNVKFLPTIYLFHDGKFVEEFEGNN 233
>SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)
Length = 215
Score = 32.3 bits (70), Expect(2) = 0.005
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 93 FQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLK 230
F ++++ L VV F A W P C ++ E+L + P F+K
Sbjct: 12 FDRILSSSSNVLAVVHFFAPWAPHCNQMNDVLEELAKENPHVNFIK 57
Score = 25.4 bits (53), Expect(2) = 0.005
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 285 PTFIFYRNRTKIDRLEGGNTTVLENKVRQY 374
P F +N+ +DR++G N L KV +
Sbjct: 51 PHVNFIKNQKVVDRIDGANAPELTKKVEHH 80
>SB_2654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 147 ATWCPPCQRIAPFFEQLPAKFPRAVFL-KVDVDRCADTASAQGVSAMPTFI 296
A WC PC+ + P + + A+ V L KVD+D + A GV+A+PT I
Sbjct: 46 ACWCNPCKVLTPRLDAIIAEQDGKVDLAKVDIDVMGELAFNFGVNAVPTVI 96
>SB_21263| Best HMM Match : Thioredoxin (HMM E-Value=0.00093)
Length = 148
Score = 36.7 bits (81), Expect = 0.020
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +3
Query: 123 KLVVVDFTATWCPPCQRIAP----FFEQLPAKFPRAVFLKVDVDR 245
K++ V F+A WCPPC++ P F+E+L + V + V DR
Sbjct: 26 KVIAVYFSAHWCPPCRQFTPILKDFYEELGGEEGDLVIIFVSSDR 70
>SB_6126| Best HMM Match : Thioredoxin (HMM E-Value=0.021)
Length = 293
Score = 36.3 bits (80), Expect = 0.027
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 123 KLVVVDFTATWCPPCQRIAPFFE 191
K+V + F+A+WCPPCQ+ P +
Sbjct: 155 KVVAIYFSASWCPPCQKFTPLLK 177
>SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06)
Length = 70
Score = 34.7 bits (76), Expect = 0.082
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +3
Query: 84 DAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFE 191
D++F++ +A G +++V+F A WC C+R+AP +E
Sbjct: 20 DSNFKSGVA--GKDIMLVEFFAPWCGHCKRLAPEYE 53
>SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019)
Length = 415
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +3
Query: 102 EMANAGT---KLVVVDFTATWCPPCQRIAP 182
E+ NAG K+V + F+A WCPPC+ P
Sbjct: 164 EVINAGDLKGKIVGIYFSAHWCPPCRAFTP 193
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = +3
Query: 72 VIQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAP----FFEQLPAKFPRA---VFLK 230
++ E + K+V + F+A WCPPC+ P F++ +K A VF+
Sbjct: 13 LVGKHGQISVESLSGEGKIVGLYFSAHWCPPCRGFTPKLVEFYQNYRSKTNNALEVVFIS 72
Query: 231 VDVD 242
D D
Sbjct: 73 SDKD 76
>SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19)
Length = 335
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 117 GTKLVVVDFTATWCPPCQRIAPFFEQLPAKF 209
G+K V + F A W CQRI F+Q+ +F
Sbjct: 42 GSKFVFIFFYAPWDDHCQRILQIFDQVADEF 72
>SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 408 NTVAGHMDLITFITKSECECLNEADDHPLAQALTNDRGYLAS 533
+TV D+ TF EC C D H L +T R + S
Sbjct: 230 HTVTVRFDIDTFFIYRECSCFFYCDGHALGAGITRKRAAMFS 271
>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 126 LVVVDFTATWCPPCQRIAPFFE-QLPAKFPRAVFLKVDVDRCADTAS 263
+++VDF A WC CQ + P E A + +F VD C D S
Sbjct: 39 IMLVDFYAPWCHHCQELLPQLEGAANALAAKGLFQFAKVD-CTDPRS 84
>SB_13486| Best HMM Match : DUF1530 (HMM E-Value=2.3)
Length = 222
Score = 29.5 bits (63), Expect = 3.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 123 KLVVVDFTATWCPPCQ 170
K+ ++DF A+WC PC+
Sbjct: 178 KVTIIDFWASWCQPCR 193
>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 612
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 116 WNQVSRCGLYSNLVSTVPKDCPF 184
W GLYS LV+TV +D PF
Sbjct: 475 WTNEGGRGLYSGLVATVARDAPF 497
>SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 123 KLVVVDFTATWCPPCQRIAPFFEQ 194
++++VDF A WC C + P +E+
Sbjct: 40 EVMLVDFYAPWCSDCDNLRPKYEK 63
>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
Length = 186
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 135 VDFTATWCPPCQRIAPFFEQLPAKF 209
V F A WC C ++AP +E+L F
Sbjct: 111 VKFYAPWCIHCIKLAPIWERLAEDF 135
>SB_8164| Best HMM Match : rve (HMM E-Value=0.00069)
Length = 1117
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 298 KMNVGIALTP*ALAVSAHLSTSTLRNTALGNFAG 197
K++ G+AL P +L V HLS S N + N G
Sbjct: 30 KLSKGVALVPGSLRVGFHLSISGQANNTVVNNVG 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,667,852
Number of Sequences: 59808
Number of extensions: 392134
Number of successful extensions: 1019
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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