Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0624
         (726 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6DB81 Cluster: Putative uncharacterized protein; n=1; ...    33   7.2  

>UniRef50_A6DB81 Cluster: Putative uncharacterized protein; n=1;
           Caminibacter mediatlanticus TB-2|Rep: Putative
           uncharacterized protein - Caminibacter mediatlanticus
           TB-2
          Length = 571

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -3

Query: 643 YQNNFNEFGIDTTLIYG-NKPSLVGVHSVYFNNLTKL*LIKTY*VYVLQQKRNMHAMRVI 467
           Y   FN +G+D   IY  N  + +GV+  Y  N     LI T     LQ+  N H   +I
Sbjct: 404 YSKKFNGYGLDVGGIYFINYKNGLGVNFAYGQNKFTQPLIATNYSNFLQRNINFHYYGMI 463

Query: 466 NTQALLNLYIFS 431
               L N+ IFS
Sbjct: 464 FNPILENINIFS 475


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,825,263
Number of Sequences: 1657284
Number of extensions: 11929928
Number of successful extensions: 20646
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 19877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20636
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)