Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0624
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50995| Best HMM Match : Foamy_BEL (HMM E-Value=2.4)                 28   6.7  
SB_16273| Best HMM Match : SWIM (HMM E-Value=0.02)                     28   6.7  
SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)                     28   6.7  

>SB_50995| Best HMM Match : Foamy_BEL (HMM E-Value=2.4)
          Length = 354

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 51  PRAAGIRHEGIPGLRSPHALIIITQQSQGRLRLDCT--KSTL 170
           PR  G  H   P  +    +II  Q++ G L +DCT  KS+L
Sbjct: 259 PRTTGATHRNHPPPKIKPQVIIDLQENPGELVVDCTNLKSSL 300


>SB_16273| Best HMM Match : SWIM (HMM E-Value=0.02)
          Length = 817

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 527 KNLLSIRITTETQYACNARD*YTGIIKFIYFFHDNDA*CTISISLSK 387
           K  L +R+ T    A N R+  + I    + FHD+DA  ++  +LSK
Sbjct: 379 KQPLPLRMKTHKGEASNCRELLSQIRCATFLFHDSDALSSLKETLSK 425


>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
          Length = 1481

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 721 PFRIGYIAANLSFRSLYNNHYSY*KLYQNNFNEFGIDT 608
           P R  ++  N S  S YNN Y+    Y NN N + I+T
Sbjct: 275 PLRPRWLRYNNSTYSSYNNRYNL-NSYNNNNNTYNINT 311


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,257,014
Number of Sequences: 59808
Number of extensions: 373622
Number of successful extensions: 582
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)