Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0624
         (726 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U90277-1|AAB49992.1| 1464|Homo sapiens N-methyl-D-aspartate rece...    31   5.6  
U09002-1|AAB60343.1| 1464|Homo sapiens N-methyl-D-aspartate rece...    31   5.6  
BC117131-1|AAI17132.1| 1281|Homo sapiens GRIN2A protein protein.       31   5.6  
AF443868-1|AAN75825.1| 1464|Homo sapiens NMDA receptor subtype 2...    31   5.6  
AB209695-1|BAD92932.1| 1491|Homo sapiens N-methyl-D-aspartate re...    31   5.6  

>U90277-1|AAB49992.1| 1464|Homo sapiens N-methyl-D-aspartate
           receptor 2A subunit precursor protein.
          Length = 1464

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 721 PFRIGYIAANLSFRSLYNNHYSY*KLYQNNFNEFGIDTTLI 599
           PFR G +    + R++ NN Y Y   Y   FN+ G++  L+
Sbjct: 679 PFRFGTVPNGSTERNIRNN-YPYMHQYMTKFNQKGVEDALV 718


>U09002-1|AAB60343.1| 1464|Homo sapiens N-methyl-D-aspartate
           receptor modulatory subunit 2A protein.
          Length = 1464

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 721 PFRIGYIAANLSFRSLYNNHYSY*KLYQNNFNEFGIDTTLI 599
           PFR G +    + R++ NN Y Y   Y   FN+ G++  L+
Sbjct: 679 PFRFGTVPNGSTERNIRNN-YPYMHQYMTKFNQKGVEDALV 718


>BC117131-1|AAI17132.1| 1281|Homo sapiens GRIN2A protein protein.
          Length = 1281

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 721 PFRIGYIAANLSFRSLYNNHYSY*KLYQNNFNEFGIDTTLI 599
           PFR G +    + R++ NN Y Y   Y   FN+ G++  L+
Sbjct: 679 PFRFGTVPNGSTERNIRNN-YPYMHQYMTKFNQKGVEDALV 718


>AF443868-1|AAN75825.1| 1464|Homo sapiens NMDA receptor subtype 2A
           gene protein.
          Length = 1464

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 721 PFRIGYIAANLSFRSLYNNHYSY*KLYQNNFNEFGIDTTLI 599
           PFR G +    + R++ NN Y Y   Y   FN+ G++  L+
Sbjct: 679 PFRFGTVPNGSTERNIRNN-YPYMHQYMTKFNQKGVEDALV 718


>AB209695-1|BAD92932.1| 1491|Homo sapiens N-methyl-D-aspartate
           receptor subunit 2A precursor variant protein.
          Length = 1491

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 721 PFRIGYIAANLSFRSLYNNHYSY*KLYQNNFNEFGIDTTLI 599
           PFR G +    + R++ NN Y Y   Y   FN+ G++  L+
Sbjct: 706 PFRFGTVPNGSTERNIRNN-YPYMHQYMTKFNQKGVEDALV 745


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,631,568
Number of Sequences: 237096
Number of extensions: 1668655
Number of successful extensions: 1972
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1972
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)