Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0624
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54170.1 68418.m06745 expressed protein weak similarity to SP...    27   9.6  
At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein si...    27   9.6  
At3g26330.1 68416.m03285 cytochrome P450 family protein contains...    27   9.6  

>At5g54170.1 68418.m06745 expressed protein weak similarity to
           SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
           {Homo sapiens}
          Length = 449

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 329 CQTKSVPAQYESPNNTQCRICLMK*IWCI 415
           C TK V      PNN Q R+ L    WCI
Sbjct: 255 CVTKGVSVPSIPPNNKQKRVDLFYSSWCI 283


>At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein
           similar to fructan 1-exohydrolase IIa GI:13940209 from
           [Cichorium intybus]; contains Pfam profile PF00251:
           Glycosyl hydrolases family 32
          Length = 550

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 563 TMYANKAWFVSVNQRRIN 616
           T YA+KA+F SV  RRIN
Sbjct: 283 TFYASKAFFDSVKNRRIN 300


>At3g26330.1 68416.m03285 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 435

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 589 CFRKSASYQFQIH*NCFDIIFSKNNDYYKE 678
           C R S +    +  N  DI+FS  NDY+KE
Sbjct: 31  CSRPSLAGPRALSYNYLDIVFSPFNDYWKE 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,357,235
Number of Sequences: 28952
Number of extensions: 256450
Number of successful extensions: 422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)