Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0622
         (625 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    25   0.52 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   4.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   6.3  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   6.3  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   8.4  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 411 CNRIYGY*NNYETDTRTHTHNRILE 485
           CNR +GY +  +   RTHT  +  E
Sbjct: 140 CNRSFGYKHVLQNHERTHTGEKPFE 164


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 10  EPKPTSPARGAPCRSTNEALAETWSQKNQ 96
           EP+PT      P +++ +    + +QK Q
Sbjct: 400 EPQPTQTTESEPTQASEQPTESSTTQKPQ 428


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/46 (23%), Positives = 17/46 (36%)
 Frame = +1

Query: 10  EPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATLPVRDD 147
           EP P  P    P    +  + E  S      S  V ++  +P+  D
Sbjct: 81  EPDPEIPVAPEPAPLASPLVQEPGSSTTSATSGAVMASPPMPITTD 126


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
 Frame = +1

Query: 4   PSEPKPTSP------ARGAPCRSTNEALAETWSQKNQKLSPQVRSTATLP 135
           P+E  PT P      A      ST        S K Q+ SPQ+   ++LP
Sbjct: 437 PTENSPTKPYYKLKTANNKRPPSTELGTNIYTSSKRQRTSPQLSPMSSLP 486


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 164 YIRFTYTLNNSFGYLTFINSQ 226
           ++RFT+  +  F Y   +N+Q
Sbjct: 471 FVRFTHLQHQPFTYKITVNNQ 491


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,393
Number of Sequences: 336
Number of extensions: 2296
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)