Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0622
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    28   1.3  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    27   2.9  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   3.8  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.8  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    26   5.1  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.9  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   8.9  

>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 13  PKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATLP 135
           P P + A+  P   T +ALA    + NQ   PQV  T   P
Sbjct: 600 PTPRTAAQEDPAEETTDALASAEGENNQ--MPQVLETEAAP 638


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 10  EPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVR 117
           EP P S A  +P + + EALAE  +       P  R
Sbjct: 64  EPSPASSASASPVKKSAEALAERSNSSMGTFDPPPR 99


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 309 WLSYCSSTTCNSMLDCRF*VYEYLTSQCHSC 401
           W+S      CNS  D +   Y +L  +C+SC
Sbjct: 342 WISTIRCNDCNSRCDTK---YHFLGHKCNSC 369


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 489 VFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYDIERL 379
           +FL   CV     L +N SN+ +   IKK+S+  ERL
Sbjct: 268 LFLSILCVGYYHHLLNNPSNTELQSLIKKYSFYSERL 304


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 316 LNHRPIVITCENKFSKSWL 260
           LN + +V+ CE  F K+WL
Sbjct: 161 LNFKKLVLECECAFQKTWL 179


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 486 FLIFDCVCVCVCLFHNYSNSHI 421
           FL F  +CVCV L   +S SH+
Sbjct: 155 FLFFFFLCVCVFLSFLFSLSHL 176


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 467 TQSNIRKTYLTTLVLIKFSNLIFH*IHYYRS*VYLNLYIKL 589
           T S+I K YL   + + F+  I   I  Y S VY  LY+ L
Sbjct: 347 TLSDIAKNYLLVPMKLLFTEPICFLITLYSSFVYAILYLLL 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,953
Number of Sequences: 5004
Number of extensions: 34467
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)