Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0622
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30649| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-24)               31   1.0  
SB_36628| Best HMM Match : Bac_Ubq_Cox (HMM E-Value=1.1)               30   1.8  
SB_28804| Best HMM Match : DUF1556 (HMM E-Value=5.1)                   29   3.1  
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9)                28   7.1  
SB_45644| Best HMM Match : zf-HYPF (HMM E-Value=3.7)                   27   9.4  
SB_17096| Best HMM Match : Novirhabdo_Nv (HMM E-Value=2.4)             27   9.4  
SB_8517| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_2957| Best HMM Match : zf-HYPF (HMM E-Value=3.1)                    27   9.4  

>SB_30649| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-24)
          Length = 463

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 393 HSCAF*-CNRIYGY*NNYETDTRTHTHNR 476
           H+C +  CN+IYG  ++ +  TRTHT  R
Sbjct: 364 HACTYAGCNKIYGKSSHLKAHTRTHTGER 392


>SB_36628| Best HMM Match : Bac_Ubq_Cox (HMM E-Value=1.1)
          Length = 461

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 504 NVVKYVFLIFDCVCVCVCLFHNYSNSHIFDYIK-KHSYDIER 382
           N+V  +FL+F    +   + +  S+ HIF ++K K  YDI R
Sbjct: 213 NIVLVLFLMFALTALIKTILNVESDEHIFKFVKAKLGYDIGR 254


>SB_28804| Best HMM Match : DUF1556 (HMM E-Value=5.1)
          Length = 259

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 1   GPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATL 132
           G SEP+  SP R +P     E+  E  S + Q    + R + T+
Sbjct: 76  GESEPERASPGRASPREQARESEPERASPREQARGERARESETV 119


>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1668

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 283  NKFSKSWLHSKNHQKQADTL 224
            NK  K+W+H  ++QK  DT+
Sbjct: 1171 NKEHKAWMHKSDYQKNTDTV 1190


>SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9)
          Length = 253

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 255 LCNHDLLNLFSHVITIGLWLSYCSSTTCNSMLDCRF*VYEYLTSQC-HSCAF*CN 416
           +CNH L  +++H +T     ++  +T CN  L         LT+ C H+    CN
Sbjct: 9   MCNHTLATMYNHTLT--TMCNHTLTTMCNHTLTAM--CNHTLTTMCNHTLTTMCN 59


>SB_45644| Best HMM Match : zf-HYPF (HMM E-Value=3.7)
          Length = 172

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 54  NERGSGGDVVAKEPKTQPSGSIDRNLT 134
           N+   G DV   EPK QP  +++RN T
Sbjct: 61  NDEYKGPDVFDLEPKLQPFSNMERNST 87


>SB_17096| Best HMM Match : Novirhabdo_Nv (HMM E-Value=2.4)
          Length = 211

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 424 YIRLH*KAQL*H*EVKYSYT*NLQSNIELHVVELQ*LNHRPIVITCENK 278
           ++ LH  +Q  H  ++      LQSNI  HV + + LN+  + IT E +
Sbjct: 65  FLELHIPSQTKHNSIELERV--LQSNIVYHVYDFKPLNYLMLTITKERR 111


>SB_8517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 7   SEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRST 123
           + PKPT+  RG P  + N+  A     + Q+L   +R T
Sbjct: 64  TSPKPTTSKRGTPDTTANQITAMFVKIRKQELIIHIRMT 102


>SB_2957| Best HMM Match : zf-HYPF (HMM E-Value=3.1)
          Length = 150

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 54  NERGSGGDVVAKEPKTQPSGSIDRNLT 134
           N+   G DV   EPK QP  +++RN T
Sbjct: 83  NDEYKGPDVFDLEPKLQPFSNMERNST 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,655,048
Number of Sequences: 59808
Number of extensions: 253884
Number of successful extensions: 675
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)