Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0622
         (625 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens ...    26   2.2  
BX640881-1|CAE45937.1|  999|Homo sapiens hypothetical protein pr...    31   3.3  
BC110332-1|AAI10333.1|  412|Homo sapiens ZNF507 protein protein.       31   3.3  
AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    26   4.6  
AK125389-1|BAC86153.1|  147|Homo sapiens protein ( Homo sapiens ...    25   6.4  
AY339211-1|AAQ02646.1|  532|Homo sapiens nonintegrin platelet re...    26   7.4  
AB002110-1|BAB70694.1|  208|Homo sapiens Bradeion alpha protein.       25   8.0  

>AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45585 fis, clone BRTHA3013882. ).
          Length = 201

 Score = 25.8 bits (54), Expect(2) = 2.2
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 471 CVCVCVCLF 445
           CVCVC+C+F
Sbjct: 134 CVCVCICVF 142



 Score = 24.6 bits (51), Expect(2) = 2.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 498 VKYVFLIFDCVCVCVCL 448
           V   F +  CVC+CVC+
Sbjct: 121 VSVCFCVSVCVCLCVCV 137


>BX640881-1|CAE45937.1|  999|Homo sapiens hypothetical protein
            protein.
          Length = 999

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 498  VKYVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYDI 388
            ++Y  L+F   C C+C F + S  ++ D++K+H  +I
Sbjct: 950  MEYCVLLF---CCCICGFESTSKENLLDHMKEHEGEI 983


>BC110332-1|AAI10333.1|  412|Homo sapiens ZNF507 protein protein.
          Length = 412

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 498 VKYVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYDI 388
           ++Y  L+F   C C+C F + S  ++ D++K+H  +I
Sbjct: 363 MEYCVLLF---CCCICGFESTSKENLLDHMKEHEGEI 396


>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 346

 Score = 25.8 bits (54), Expect(3) = 4.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 480 IFDCVCVCVCL 448
           +F CVC+CVC+
Sbjct: 47  VFVCVCICVCV 57



 Score = 21.0 bits (42), Expect(3) = 4.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 471 CVCVCVCLF 445
           CVCV VC++
Sbjct: 76  CVCVSVCVY 84



 Score = 20.6 bits (41), Expect(3) = 4.6
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 498 VKYVFLIFDCVCVCV 454
           V     ++ CVC+CV
Sbjct: 13  VSVCLYLYVCVCICV 27


>AK125389-1|BAC86153.1|  147|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43399 fis, clone OCBBF2009926. ).
          Length = 147

 Score = 24.6 bits (51), Expect(2) = 6.4
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 474 DCVCVCVCL 448
           +CVCVCVC+
Sbjct: 74  ECVCVCVCV 82



 Score = 24.2 bits (50), Expect(2) = 6.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 471 CVCVCVCLFHNYSNSHIFDYIK 406
           CVCVCVC+       H++   K
Sbjct: 81  CVCVCVCVRVGVVLGHLWPVTK 102


>AY339211-1|AAQ02646.1|  532|Homo sapiens nonintegrin platelet
           receptor for type I collagen protein.
          Length = 532

 Score = 26.2 bits (55), Expect(2) = 7.4
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -2

Query: 471 CVCVCVCLF 445
           CVC+CVCLF
Sbjct: 37  CVCLCVCLF 45



 Score = 22.2 bits (45), Expect(2) = 7.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 504 NVVKYVFLIFDCVCVCVCL 448
           N++  ++L    VCVC+C+
Sbjct: 24  NLIIGIYLYEKTVCVCLCV 42


>AB002110-1|BAB70694.1|  208|Homo sapiens Bradeion alpha protein.
          Length = 208

 Score = 24.6 bits (51), Expect(2) = 8.0
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 474 DCVCVCVCL 448
           +CVCVCVC+
Sbjct: 142 ECVCVCVCV 150



 Score = 23.8 bits (49), Expect(2) = 8.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 471 CVCVCVCLFHNY 436
           CVC+CVC+   Y
Sbjct: 153 CVCLCVCVSGTY 164


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,627,578
Number of Sequences: 237096
Number of extensions: 1167176
Number of successful extensions: 3781
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3753
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)