Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0622
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-7|CAA96592.1|  140|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    30   1.5  
U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine rece...    29   2.7  
Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    29   3.6  
AC006717-1|AAY55883.2|  101|Caenorhabditis elegans Hypothetical ...    29   3.6  
AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical...    28   4.7  
Z83233-3|CAB05762.1|   83|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL132952-25|CAB63388.1|  513|Caenorhabditis elegans Hypothetical...    27   8.2  
AL132846-9|CAB63368.1|  513|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z72502-7|CAA96592.1|  140|Caenorhabditis elegans Hypothetical
           protein C08B6.10 protein.
          Length = 140

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 4   PSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRS 120
           P+ P P++P   AP R     +  TW+ + Q+   Q+ S
Sbjct: 30  PANPTPSNPVTAAPIRRQPTVIQTTWAPQIQQPQQQLES 68


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 4   PSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATLPVRDDVS 153
           P+  KP +P+RG P          T +  +   SPQ+  T TLP    V+
Sbjct: 250 PAAKKP-APSRGRPSNKRQTTTTTTTTITSVSKSPQISDTNTLPTLPSVT 298


>U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 28 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 462 HTHNRILEKRI*RH*Y*LNSLT*YFIKYIIIAHECILIFILN*CV 596
           + HN+I EKR+  + Y +NS    +  Y+     CI+IF    CV
Sbjct: 207 YIHNKIREKRMVHNVYNINSRYKSYENYLATKSVCIVIFSQILCV 251


>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 498 VKYVFLIFDCVCVCVCLFHNYSNSHIFD 415
           V++++++   VC+C+C+   YS SH+ D
Sbjct: 66  VRFLWVVVSLVCICLCM---YSFSHVKD 90


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 498 VKYVFLIFDCVCVCVCLFHNYSNSHIFD 415
           V++++++   VC+C+C+   YS SH+ D
Sbjct: 66  VRFLWVVVSLVCICLCM---YSFSHVKD 90


>AC006717-1|AAY55883.2|  101|Caenorhabditis elegans Hypothetical
           protein Y14H12A.2 protein.
          Length = 101

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 142 DDVSLLMLHSIHVYFK*FIRLFNFH*FSTC-QPVFDDSYYVTTI 270
           DD  +++L+ +H+    F+R+ N   F +C Q  F D+ +  T+
Sbjct: 33  DDDPIILLNCVHLLVLHFVRICNISSFKSCFQTWFSDNCWSCTV 76


>AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical
           protein Y87G2A.13 protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 492 YVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYD 391
           Y  L + C+C+ VCLF  Y+ S +++YI   + D
Sbjct: 101 YTSLHWLCLCIPVCLF-VYTLSEVYNYIMPDNRD 133


>Z83233-3|CAB05762.1|   83|Caenorhabditis elegans Hypothetical
           protein K06B4.3 protein.
          Length = 83

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -2

Query: 489 VFLIFDCVCVCVCLF---HNYSNS-HIFDYIKKHS 397
           VF++  C C C CLF   +N++NS + +D I   S
Sbjct: 48  VFIVCCCCCCCGCLFRSNNNFNNSNNSYDNISNDS 82


>AL132952-25|CAB63388.1|  513|Caenorhabditis elegans Hypothetical
           protein Y51H4A.25a protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 507 TNVVKYVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYDIERLNIH 370
           T + KY+ L F    +C+C+F+  S   + D    +  D  ++ I+
Sbjct: 44  TKLPKYLLLFFGSTVICLCIFY-ISRPQLNDNFDPNISDKRKIRIY 88


>AL132846-9|CAB63368.1|  513|Caenorhabditis elegans Hypothetical
           protein Y51H4A.25a protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 507 TNVVKYVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYDIERLNIH 370
           T + KY+ L F    +C+C+F+  S   + D    +  D  ++ I+
Sbjct: 44  TKLPKYLLLFFGSTVICLCIFY-ISRPQLNDNFDPNISDKRKIRIY 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,057,158
Number of Sequences: 27780
Number of extensions: 199385
Number of successful extensions: 589
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)