Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0622
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   3.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   5.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.8  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 33  SRRTLPINERGSGGDVVAKEPKTQPSG 113
           +RR    + RG+GG    K P+T  SG
Sbjct: 3   TRRVKRSDGRGNGGTPEEKRPRTAFSG 29


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 88  KNQKLSPQVRSTATLPVRDDVSLLMLHSIH 177
           +N    PQ  + AT+P+     + M+H +H
Sbjct: 301 RNGLAFPQRETGATVPLHMQKYVQMIHDLH 330


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 301 IVITCENKFSKSWLH 257
           I+ITC  + SKS +H
Sbjct: 60  ILITCRKRVSKSRIH 74


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 88  KNQKLSPQVRSTATLPVRDDVSLLMLHSIH 177
           +N    PQ  + AT+P+     + M+H +H
Sbjct: 301 RNGLAFPQRETGATVPLHMQKYVQMIHDLH 330


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 53  DRQGAPRAGEVGFGSEG 3
           D  G P   E+GF +EG
Sbjct: 206 DHYGVPTLEELGFDTEG 222


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 447 FHNYSNSHIFDYIKKHSYDIERLNI 373
           ++NY+N++  +Y KK  Y    +NI
Sbjct: 330 YNNYNNNNYNNYNKKLYYKNYIINI 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,989
Number of Sequences: 438
Number of extensions: 2612
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)