Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0622
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family pr...    29   1.9  
At5g17160.1 68418.m02010 expressed protein                             29   3.3  
At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family pr...    28   4.4  
At4g17800.1 68417.m02656 DNA-binding protein-related contains Pf...    27   7.7  

>At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 307

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
 Frame = -1

Query: 85  ATTSPPEPRSLIGRVRREQ--ERLALAQKV 2
           ATTSP +P+SL  + RRE+  ERL + Q++
Sbjct: 204 ATTSPKDPQSLAAKNRRERISERLKVLQEL 233


>At5g17160.1 68418.m02010 expressed protein
          Length = 569

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 7   SEPKPTSPARGAPCRSTNEALAETWSQKN 93
           +EP+P+S      CRST+++LA    Q+N
Sbjct: 80  AEPQPSSQLVSRSCRSTSKSLAGDMDQEN 108


>At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 298

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = -1

Query: 82  TTSPPEPRSLIGRVRREQ--ERLALAQKV 2
           TTSP +P+SL  + RRE+  ERL + Q++
Sbjct: 199 TTSPKDPQSLAAKNRRERISERLKILQEL 227


>At4g17800.1 68417.m02656 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 292

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 63  GSGGDVVAKEPKTQPSGS 116
           G GGDVV + P+ +P GS
Sbjct: 74  GGGGDVVGRRPRGRPPGS 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,039,928
Number of Sequences: 28952
Number of extensions: 171302
Number of successful extensions: 468
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)