Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0621
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.9  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   5.0  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   5.0  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   6.7  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   8.8  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.8  

>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 630 TANGIGFLTYRVLSPIHSTLNLTYSYELSNESPHQNPRL 514
           T N +G    + LS + S  +LT+ Y  S+ + H N R+
Sbjct: 348 TLNDVGCRNVQFLSSLISQQDLTFFYPFSSFTVHSNVRI 386


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 6   RPSEPKPTSPARGAPCRPTNEALARR 83
           +  EP P S A  +P + + EALA R
Sbjct: 61  KKKEPSPASSASASPVKKSAEALAER 86


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 286 KALGVDFILIVIICVNVSPKYGSDTLINL 372
           K LG+DF + +++C     +YGS+ L +L
Sbjct: 147 KELGIDFPVNLLMCFEGMEEYGSEGLEDL 175


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 678 SYVLIESALPLRSF*NTANGIGFLTYRVLSPIHSTLNLTYSYELSNESP 532
           S  L+ES L  RSF +  NG  +   RV      + N+  S   +N+ P
Sbjct: 441 SQTLVESKLQNRSFADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEP 489


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 597 VLSPIHSTLNLTYSYELSNESPHQNPRLSW 508
           V S ++ST+NL +  +L+ ES H++   +W
Sbjct: 147 VSSALNSTMNLKFLVQLAIESGHEDYFETW 176


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 603 YRVLSPIHSTLNLTYSYELSNESPHQNPRLSWNRTHNN 490
           Y VL P HS+    YS+  SN  P Q+P L+  + + N
Sbjct: 147 YSVL-PDHSSQPNAYSFTGSNILPTQSPSLNQMQDYQN 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,635
Number of Sequences: 5004
Number of extensions: 55949
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)