Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0621
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1406 + 26343915-26346032                                         30   1.7  
02_04_0350 + 22234632-22235145,22235277-22236209,22237253-222373...    30   2.3  
08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364...    29   3.0  
01_01_0180 + 1533219-1533536,1533658-1533825,1535404-1535475,153...    28   7.0  
05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884     28   9.2  
03_05_0815 + 27917516-27917767,27918024-27918110,27918281-279183...    28   9.2  

>07_03_1406 + 26343915-26346032
          Length = 705

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 6   RPSEPKPTSPARGAPCRPTNEALARRGRH 92
           RP  P   SPA  + C P   A ARRG H
Sbjct: 19  RPRLPPLASPATTSTCAPAPAATARRGSH 47


>02_04_0350 +
           22234632-22235145,22235277-22236209,22237253-22237340,
           22237859-22237865
          Length = 513

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 98  GSVTTTPRQSLVCWSAGCAACRRGWLWLRR 9
           GS+TT     LV ++ G A C  G+LW+ R
Sbjct: 305 GSITTMSNDELVEFAWGLANCGHGFLWIVR 334


>08_02_1571 -
           27935756-27935950,27936048-27936199,27936294-27936403,
           27936845-27937050,27937212-27937295,27937367-27937525,
           27937621-27937728,27938103-27938278,27938376-27938462,
           27938546-27938657,27938737-27938817,27938890-27938943,
           27939107-27939183,27939262-27939331,27939552-27939666,
           27939840-27939937,27940041-27940179,27940267-27940868,
           27941270-27941399,27941471-27941529
          Length = 937

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 632 FQKDLSGKALSIST*LSVSIQMTFRHLHKLNSLC 733
           FQ DL+ K   +ST L+ SI    +HL  + +LC
Sbjct: 558 FQADLASKLDILSTTLATSIDQQNKHLKSVENLC 591


>01_01_0180 +
           1533219-1533536,1533658-1533825,1535404-1535475,
           1536174-1536179,1536228-1536440,1537434-1537700,
           1537947-1538267
          Length = 454

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 3   PRPSEPKPTSPARGAPCRPTNEALARRGRHGTTVAYIVDDSGSDH 137
           P P E +P+SP+    C   +    RRG   + VA + D +  DH
Sbjct: 6   PPPPEEEPSSPSLRLRCAVQHYEWGRRG-EASLVARLSDANADDH 49


>05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884
          Length = 271

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 54  RPTNEALARRGRHGTTVAYIVDDSGS 131
           RP+  A  RR RHGT VAY+  +  S
Sbjct: 22  RPSPSAPNRRRRHGTVVAYMEPNPNS 47


>03_05_0815 +
           27917516-27917767,27918024-27918110,27918281-27918394,
           27919644-27919835,27919925-27921677,27921771-27922708,
           27923587-27923859
          Length = 1202

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 618 IGFLTYRVLSPIHSTLNLTYSYELSNESPHQNPRLSWNRTHNNE 487
           I F  +  ++P+ S  N   + ELS  S  ++P  ++ R  +NE
Sbjct: 383 ITFTLFLAVTPLKSASNEPETQELSEHSQREDPDTTYQREASNE 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,790,471
Number of Sequences: 37544
Number of extensions: 333510
Number of successful extensions: 969
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)