Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0617
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   3.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.3  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   9.6  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 22 THTHISHIRCSNVTYA 69
          +H+++   RC+N TYA
Sbjct: 38 SHSNVYQYRCANCTYA 53


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 394 YTAVWSSGKRHGHYTRGSRVRIPPR 320
           YT V ++      YT   +V++PPR
Sbjct: 687 YTCVAANPAAEVRYTAKLQVKVPPR 711


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +1

Query: 442 LTSISKSKHLARFTNNY*KMYFLILS 519
           ++S+S + +   + NNY  +Y+ I++
Sbjct: 315 ISSLSNNYNYNNYNNNYKPLYYNIIN 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,335
Number of Sequences: 438
Number of extensions: 5203
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)