Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0616
         (674 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.75 
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    22   5.3  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   7.0  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   7.0  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   7.0  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.2  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    21   9.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.2  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 253 SIGSLERGSISPLTLSGSSPP 315
           S     R S+SPL  S SSPP
Sbjct: 168 SPSGFNRASVSPLISSSSSPP 188


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +2

Query: 404 KYLTAFILFAGLAWTENRPTR 466
           K+  AF++  G  W E   T+
Sbjct: 2   KFFIAFLMLLGAVWCEQYTTK 22


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -1

Query: 464 GWVCSLSRQARQKV*KQLSTLGSMNVSRQMAQVVSSPS 351
           GW  ++ R  + +  +  ST+G M   + + ++   PS
Sbjct: 594 GWTANMERIMKAQALRDTSTMGYMAAKKHL-EINPDPS 630


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 663 QRVTASDSLDLQPVQRA-QGRACLSPR*EQLSVLVDSSGDH*IRKK 529
           Q +  S S+  QP +   Q +  L+P  E+ SVLV ++ D   ++K
Sbjct: 28  QSIIVSGSIT-QPTKTVIQSKRPLAPAPERTSVLVTNNSDLRCKRK 72


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 37  VCFINYTYEFRISEFLF*NYCSCVCSVI 120
           VCF +Y Y F    F F   C  +  ++
Sbjct: 62  VCFNSYMYAFTHIFFFFAICCDFIALIV 89


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 590 GDRQALPWAR 619
           GDRQ  PW R
Sbjct: 206 GDRQIYPWMR 215


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 590 GDRQALPWAR 619
           GDRQ  PW R
Sbjct: 206 GDRQIYPWMR 215


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +1

Query: 370 CAICRETFIDPKVLNCFHTF 429
           C  CRE+F+  + +   H +
Sbjct: 81  CYCCRESFLRERTITLTHCY 100


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 590 GDRQALPWAR 619
           GDRQ  PW R
Sbjct: 206 GDRQIYPWMR 215


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,825
Number of Sequences: 336
Number of extensions: 3363
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)