Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0616
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 42 8e-05
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 40 2e-04
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 37 0.002
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 36 0.005
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 33 0.029
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.029
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 31 0.12
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 30 0.35
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 29 0.46
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 29 0.61
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 29 0.81
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.81
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.81
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 28 1.1
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 28 1.1
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy... 27 2.5
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 3.3
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 3.3
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 27 3.3
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 4.3
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 26 4.3
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 4.3
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 26 4.3
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha... 26 5.7
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c... 26 5.7
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 26 5.7
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5... 25 7.6
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 25 7.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 7.6
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 10.0
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 25 10.0
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 25 10.0
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 41.9 bits (94), Expect = 8e-05
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 355 GLDTT--CAICRETFIDPKVLNCFHTFCRACL-DREQTHPDRVTCVTCRVDTQ 504
GLD++ C IC E F P + +C HTFC C+ D + HP C CR Q
Sbjct: 22 GLDSSLRCLICHEYFRAPLITSCSHTFCSFCIRDYLREHP---MCPACRAPEQ 71
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 40.3 bits (90), Expect = 2e-04
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Frame = +1
Query: 280 ISPLTLSGSSPPASDSAVCDLRDFDGLDTTCAIC-RETFIDPKVLNCFHTFCRACLDREQ 456
I+ ++G P+ + L+ F+ L T C IC E +P +LNC H C CL
Sbjct: 847 INQFVVTGKPIPSDILKIDTLKSFEALITECPICCNEPIQNPLLLNCKHACCGDCLSEHI 906
Query: 457 THPDR-----VTCVTCR 492
+ R C TCR
Sbjct: 907 QYQKRRNIIPPLCHTCR 923
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQLP 510
C IC DP V C HTFC CL + T + C TCR P
Sbjct: 169 CQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQ--CPTCRFGLPSP 213
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRAC-LDREQTHPDRVTCVTCRVDTQ 504
C IC++ + P C H FC C + R + P TC+ C DT+
Sbjct: 254 CLICKKDYRSPIATTCGHHFCEQCAITRYRKTP---TCIQCGADTK 296
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 33.5 bits (73), Expect = 0.029
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +1
Query: 325 SAVCDLRDFDGLDTTCAICRETFIDPKVLNCFHTFCRACL 444
S + LRDF+ CAIC P L C H FC CL
Sbjct: 350 SIIPQLRDFE-----CAICSNVAYKPVRLGCSHVFCLHCL 384
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 33.5 bits (73), Expect = 0.029
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR--VDTQLPPGGVDSLLTNL 543
C IC E P +C HT+C CL + +C TCR + TQ P + + N+
Sbjct: 85 CPICTEALQRPFTTHCGHTYCYECL--LNWLKESKSCPTCRQKLYTQPSPAYLVYEIMNV 142
Query: 544 VIAA 555
V A+
Sbjct: 143 VAAS 146
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 316 ASDSAVCDLRDFDGLDTTCAICRETFIDPKVLNCFHTFCRACL 444
AS D+ + + + C IC E D C HTFCR C+
Sbjct: 695 ASKRKTVDIENQENI--VCKICDEVAQDAIESRCHHTFCRLCV 735
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 29.9 bits (64), Expect = 0.35
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = -1
Query: 353 SKSRKSHTAESLAGGDEPLRVRGDMEPRSSEPIELAPGSDSRDGVREAIFRKPASQSKPN 174
S S + ++L G+E + P SS P S+ DG+ + R+ +S ++P+
Sbjct: 285 SNDNVSVSVKALENGNEEVSNNHARSPHSSRACNTIP-SNKNDGLNDDHQRQDSSVAEPS 343
Query: 173 PCIKKIK 153
P K+++
Sbjct: 344 PTSKRLR 350
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 29.5 bits (63), Expect = 0.46
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
C ICR+ + C H +C CL+ H +C C+
Sbjct: 1092 CIICRDIIKQGFITTCGHLYCSFCLEAWLKHSS--SCPMCK 1130
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 29.1 bits (62), Expect = 0.61
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Frame = +1
Query: 313 PASDSAVCDL--RDFDGLDTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVT 486
P S+ A D + D + C IC E VL C H C C R + C
Sbjct: 60 PVSNVATVDASKEEQDEDEQICFICAEGITYSCVLPCNHRMCHVCALRLRALYKTKECTF 119
Query: 487 CRVD 498
C+ +
Sbjct: 120 CKTE 123
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 28.7 bits (61), Expect = 0.81
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 370 CAICRETFIDPKVL-NCFHTFCRACLDREQTHPDRVTCVTC 489
C++C + K++ NC H FC C++ H TC C
Sbjct: 639 CSVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTS-TCPQC 678
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.7 bits (61), Expect = 0.81
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = -1
Query: 449 LSRQARQKV*KQLS-TLGSMNVSRQMAQVVSSPSKSRKSHTAESLAGGDEPLRVRGDMEP 273
++++A +++ KQ S T S S++ A+ SSP S+KS + + E + E
Sbjct: 32 ITKEAAKEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESES 91
Query: 272 RSSEPIELAPGSDSRDGVREAIFRKPASQSKPNPCIKK 159
SSE + S+S E+ + +S I K
Sbjct: 92 SSSESESSSSESESSSSESESSSSESSSSESEEEVIVK 129
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 28.7 bits (61), Expect = 0.81
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 382 RETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
R P +C HT+C AC+ + V+C C+
Sbjct: 202 RVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICK 238
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 28.3 bits (60), Expect = 1.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACLD 447
C++C E P C H FC +C++
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCIN 281
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Frame = +1
Query: 358 LDTTCAICR-ETFIDP--KVL---NCFHTFCRACLDR 450
+D C +C+ + +++P K+L C+H C +C+DR
Sbjct: 9 VDEKCPLCQADRYLNPNMKLLINPECYHKMCESCVDR 45
>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 284
Score = 27.1 bits (57), Expect = 2.5
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = -1
Query: 407 TLGSMNVSR-QMA-QVVSSPSKSRKSHTAESLAGGDEPLRVRGDMEPRSSEPIELAPGSD 234
T+G+ +++R ++A ++V + RK + E GDE + + D R + + +APG++
Sbjct: 215 TVGASSMARYKLANEIVKMRASFRKQNHIEGK--GDESVVLAFDEGSRGIQLVHIAPGAE 272
Query: 233 SRDGVREA 210
SR + +A
Sbjct: 273 SRRKIWKA 280
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 206 RWPHAPRPLSRCPVPTQ*VR 265
RW HAP + RC P VR
Sbjct: 388 RWLHAPEKIKRCSFPIHGVR 407
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACLD-REQTHP 465
C IC E +P VL+ FC C+ Q HP
Sbjct: 257 CKICGEKIKNPAVLSTGFVFCYPCIQVWLQRHP 289
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 26.6 bits (56), Expect = 3.3
Identities = 22/51 (43%), Positives = 24/51 (47%)
Frame = +2
Query: 299 AVHHPLRATPPYVIYATSTDSIPLAPSAVRHSSTPKYLTAFILFAGLAWTE 451
A HPLR P +V S P A S V HS P Y +F L G WTE
Sbjct: 144 AAVHPLR--PSHVSGPLSPPE-PKAAS-VDHSINPAYNASFRLPDGPLWTE 190
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 406 VLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQL 507
++N +F R C +TH +RVT VT TQ+
Sbjct: 1120 LINFLDSFIRLCHLPAKTHDERVTAVTVIRCTQI 1153
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 4.3
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +1
Query: 217 RTPSLESLPGANSIGSLERGSISPLTLSGSSPPASDSAVCDLRDFDGLDTT---CAICRE 387
RTP+L+ LP S+ +++ T S P+ C+L++ D + C++
Sbjct: 81 RTPALKLLPETLSVELSNEVNLTSSTTSSCVKPSPYLTNCNLKNKDTFPVSKNNCSLSSG 140
Query: 388 TFIDPK-VLNCFHT 426
F + NCF T
Sbjct: 141 IFTNSNGTNNCFST 154
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 287 PSLSAVHHPLRATPPYVIYATSTDSIPLAPSAVRHSSTP 403
P+ + HHP PP + ++ + S+P AP +SSTP
Sbjct: 736 PTPAVKHHP----PPPPVRSSISPSMPPAPLTHANSSTP 770
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 205 KMASRTPSLESLPGANSIGSLERGSISPLTLSGSSPPASDSAVCDLRDFDGLD 363
K SR+ S+ + P +S+ SLE + L++ + +SDS + + FD L+
Sbjct: 265 KFTSRSSSVYASPIKSSLNSLECNPSNLLSVRKNFQQSSDSYLKSNKSFDQLN 317
>SPAC13G7.11 |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/40 (22%), Positives = 18/40 (45%)
Frame = +1
Query: 379 CRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVD 498
CR T+++P L FH + + P + + C ++
Sbjct: 20 CRNTYVNPMFLRYFHCAVPRAISQRALKPMDIPFLQCYIE 59
>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 154
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 364 TTCAICRETFIDPKVLNCFHTFC 432
TTC+IC E+ I K C +C
Sbjct: 2 TTCSICNESEIKYKCPKCSFPYC 24
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -1
Query: 368 VVSSPSKSRKSHTAES---LAGGDEPLRVRGDMEPRS 267
VV S S + + TAE+ AGG +P R RG+ P S
Sbjct: 38 VVGSSSANANASTAETGKKSAGGSKPKRRRGERIPPS 74
>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
Whi5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 252
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 317 RATPPYVIYATSTDSIPLAPSAVRHSSTPKYLTAFILFAGLAWTENRPTRTE 472
R +PP++ Y +P P + H+ST + LF G+ + +RP T+
Sbjct: 154 RTSPPWLNYVEPHTELPRLPFELSHASTASAKSP--LF-GMNYHISRPEETD 202
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 7.6
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Frame = +1
Query: 241 PGANSIGSLERGS-ISPLTLSGSSPPASDSAVCDLRDFDGLDTTCAICRETF-IDP--KV 408
P S +E S +S + + +S S C L D + C IC + D +V
Sbjct: 164 PNLGSTSFVEMSSALSNIYNTDASDGDSSDDSCLLEDEEDF---CIICYADYAFDDILRV 220
Query: 409 LNCFHTFCRACLDREQTHPDRVTCVTCRVD 498
L C H F C+D T + +C C D
Sbjct: 221 LPCEHVFHTQCIDTWMT-TMKASCPLCNED 249
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/65 (26%), Positives = 21/65 (32%)
Frame = +2
Query: 212 PHAPRPLSRCPVPTQ*VRWSVAPYRPSLSAVHHPLRATPPYVIYATSTDSIPLAPSAVRH 391
P P P PVP V P + V P PP + +P S
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPS 1248
Query: 392 SSTPK 406
STP+
Sbjct: 1249 VSTPR 1253
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 10.0
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +2
Query: 188 GMPVS*RWPHAPRPLSRCPVPTQ*VR-WSVAPYRPSLSAVHHPLRATPPYVIYATSTDSI 364
G+P+S + H P P+P V S+ Y P+ A HP + P+ + +
Sbjct: 254 GLPLSVMYNHFPS----VPIPPATVNDTSMEYYLPN--AYPHPTGISLPFYPFDSGIPVS 307
Query: 365 PLAPSAVRHSSTPKYLTAF 421
P P + S P Y T F
Sbjct: 308 PNIPVSPSSSFVPMYPTTF 326
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -3
Query: 429 KSMKAVKYFGVDE--CLTADGASGIESVE 349
K+M ++ +G+ CL A+ A G++SVE
Sbjct: 57 KTMTSLGVYGMSAITCLVAENAGGVDSVE 85
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = +1
Query: 361 DTTCAICRETFIDPKVLNCFHTFCRAC-LDREQTHPDRVTCVTCR 492
D C IC ++ + C H FC C L T C CR
Sbjct: 203 DYKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCR 247
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,778
Number of Sequences: 5004
Number of extensions: 55672
Number of successful extensions: 212
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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