Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0616
(674 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger) fa... 50 2e-06
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq... 44 9e-05
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 43 2e-04
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 43 2e-04
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 43 2e-04
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 43 2e-04
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 43 2e-04
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 42 4e-04
At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger) fa... 42 5e-04
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing... 41 9e-04
At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger) fa... 40 0.002
At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger) fa... 40 0.002
At2g30580.1 68415.m03726 zinc finger (C3HC4-type RING finger) fa... 39 0.003
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa... 39 0.004
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa... 39 0.004
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa... 39 0.004
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa... 39 0.004
At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger) fa... 38 0.005
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 38 0.006
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa... 38 0.006
At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger) fa... 38 0.008
At4g09110.1 68417.m01503 zinc finger (C3HC4-type RING finger) fa... 38 0.008
At3g61460.1 68416.m06883 zinc finger (C3HC4-type RING finger) fa... 38 0.008
At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger) fa... 38 0.008
At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing... 38 0.008
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 37 0.011
At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger) fa... 37 0.011
At5g41400.1 68418.m05030 zinc finger (C3HC4-type RING finger) fa... 37 0.014
At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger) fa... 37 0.014
At4g35480.1 68417.m05042 zinc finger (C3HC4-type RING finger) fa... 37 0.014
At1g69330.1 68414.m07954 zinc finger (C3HC4-type RING finger) fa... 36 0.019
At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger) fa... 36 0.025
At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger) fa... 36 0.025
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 36 0.025
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 36 0.025
At1g63840.1 68414.m07226 zinc finger (C3HC4-type RING finger) fa... 36 0.025
At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger) fa... 36 0.033
At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger) fa... 36 0.033
At5g46650.1 68418.m05748 zinc finger (C3HC4-type RING finger) fa... 35 0.057
At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger) fa... 35 0.057
At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger) fa... 35 0.057
At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) fa... 35 0.057
At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger) fa... 34 0.075
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 34 0.100
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 34 0.100
At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa... 34 0.100
At4g11360.1 68417.m01832 zinc finger (C3HC4-type RING finger) fa... 33 0.13
At4g10940.1 68417.m01779 PHD finger family protein contains Pfam... 33 0.13
At4g09120.1 68417.m01505 zinc finger (C3HC4-type RING finger) fa... 33 0.13
At1g61620.1 68414.m06943 expressed protein contains Pfam profile... 33 0.17
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa... 33 0.17
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa... 33 0.17
At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger) fa... 33 0.23
At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger) fa... 33 0.23
At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger) fa... 33 0.23
At4g00305.1 68417.m00038 zinc finger (C3HC4-type RING finger) fa... 33 0.23
At1g71980.1 68414.m08320 protease-associated zinc finger (C3HC4-... 33 0.23
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 33 0.23
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 32 0.30
At5g12310.1 68418.m01447 zinc finger (C3HC4-type RING finger) fa... 32 0.30
At3g54360.1 68416.m06008 expressed protein DNA-binding Mel-18 pr... 32 0.30
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa... 32 0.30
At5g13530.1 68418.m01562 protein kinase family protein / ankyrin... 31 0.53
At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger) fa... 31 0.53
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 31 0.53
At2g25380.1 68415.m03039 zinc finger protein-related very low si... 31 0.53
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 31 0.53
At1g49220.1 68414.m05518 zinc finger (C3HC4-type RING finger) fa... 31 0.53
At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger) fa... 31 0.70
At1g65430.1 68414.m07423 zinc finger protein-related contains we... 31 0.70
At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger) fa... 31 0.93
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 31 0.93
At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger) fa... 31 0.93
At3g30460.1 68416.m03854 zinc finger (C3HC4-type RING finger) fa... 31 0.93
At2g21420.1 68415.m02549 zinc finger protein-related contains lo... 31 0.93
At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger) fa... 31 0.93
At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger) fa... 30 1.2
At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger) fa... 30 1.2
At2g44330.1 68415.m05514 zinc finger (C3HC4-type RING finger) fa... 30 1.2
At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger) fa... 30 1.2
At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger) fa... 30 1.2
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 30 1.6
At2g17450.1 68415.m02014 zinc finger (C3HC4-type RING finger) fa... 30 1.6
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 30 1.6
At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger) fa... 29 2.1
At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger) fa... 29 2.1
At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger) fa... 29 2.1
At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger) fa... 29 2.1
At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger) fa... 29 2.1
At5g37230.1 68418.m04472 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 29 2.8
At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At1g22670.1 68414.m02833 protease-associated zinc finger (C3HC4-... 29 2.8
At5g37270.1 68418.m04477 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At4g11370.1 68417.m01833 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 29 3.8
At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 29 3.8
At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At5g60590.2 68418.m07599 yrdC protein-related 28 5.0
At5g37200.1 68418.m04466 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At5g20885.1 68418.m02480 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At3g61550.1 68416.m06894 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finger) fa... 28 6.6
At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger) fa... 28 6.6
At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger) fa... 28 6.6
At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger) fa... 28 6.6
At1g60280.1 68414.m06788 no apical meristem (NAM) protein-relate... 28 6.6
At5g37250.1 68418.m04475 zinc finger (C3HC4-type RING finger) fa... 27 8.7
At5g27870.1 68418.m03343 pectinesterase family protein similar t... 27 8.7
At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger) fa... 27 8.7
At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger) fa... 27 8.7
At5g19430.1 68418.m02315 zinc finger (C3HC4-type RING finger) fa... 27 8.7
At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger) fa... 27 8.7
At3g60080.1 68416.m06709 zinc finger (C3HC4-type RING finger) fa... 27 8.7
At3g29270.2 68416.m03675 expressed protein 27 8.7
At3g29270.1 68416.m03674 expressed protein 27 8.7
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 27 8.7
At2g44410.1 68415.m05523 expressed protein 27 8.7
At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr... 27 8.7
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr... 27 8.7
>At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/61 (37%), Positives = 29/61 (47%)
Frame = +1
Query: 319 SDSAVCDLRDFDGLDTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVD 498
+D + D D L C+IC+ F+DP V NC H FC C + T D TC C
Sbjct: 69 TDFVLTGEEDDDALPLACSICQNPFLDPVVTNCNHYFCDKCALKHHTEND--TCFVCNEP 126
Query: 499 T 501
T
Sbjct: 127 T 127
>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
ubiquitin ligase, contains two RING finger domain;
identical to PRT1 [Arabidopsis thaliana] GI:3319884
Length = 410
Score = 44.0 bits (99), Expect = 9e-05
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 361 DTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRV 495
D C+ C+E + P VLNC H +C C+ +++ C C V
Sbjct: 189 DLLCSACKELLVRPVVLNCGHVYCEGCVVDMAEESEKIKCQECNV 233
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
C +C E P VL+C H C C+ + C CR
Sbjct: 26 CCVCLELLYKPIVLSCGHLSCFWCVHKSMNGFRESHCPICR 66
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +1
Query: 370 CAICRETFID----PKVLNCFHTFCRACLDR-EQTHPDRVTCVTCRVDTQLPPGGVDSLL 534
C +C +++ P+VL C HT C CL + PD + C C V + PP G +L
Sbjct: 6 CPVCLQSYDGESTVPRVLACGHTACEECLTNLPKKFPDTIRCPACTVLVKFPPQGPSALP 65
Query: 535 TNL 543
N+
Sbjct: 66 KNI 68
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +1
Query: 346 DFDGLDTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDT 501
D + L C ICRE F+DP V C H FC C + H C C T
Sbjct: 269 DENALPFACFICREPFVDPVVTKCKHYFCEHCALKH--HTKNKKCFVCNQPT 318
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +1
Query: 346 DFDGLDTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDT 501
D + L C ICRE F+DP V C H FC C + H C C T
Sbjct: 304 DENALPFACFICREPFLDPVVTKCKHYFCEHCALKH--HTKNKKCFVCNQPT 353
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +1
Query: 346 DFDGLDTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDT 501
D + L C ICRE F+DP V C H FC C + H C C T
Sbjct: 304 DENALPFACFICREPFLDPVVTKCKHYFCEHCALKH--HTKNKKCFVCNQPT 353
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +1
Query: 319 SDSAVCDLRDFDGLDTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTC 489
S A +L D + + C +C + D V +C H FC+ACL +VTC TC
Sbjct: 562 SSGANANLVDENKSEQECGLCHDPAEDYVVTSCAHVFCKACLIGFSASLGKVTCPTC 618
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +1
Query: 283 SPLTLSGSSPPAS--DSAVCDLRDFDGLDTTCAICRETFIDPKVLNCFHTFCRACLDREQ 456
+P ++S ++P + + + DLRD G C IC E+ DP + C H CR CL
Sbjct: 1011 NPDSVSQNAPSRAYIEEVIQDLRD--GNSKECPICLESADDPVLTPCAHRMCRECLLTSW 1068
Query: 457 THPDRVTCVTCR 492
P C CR
Sbjct: 1069 RSPSCGLCPICR 1080
>At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger)
family protein
Length = 421
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 367 TCAICRETFIDPKVLN-CFHTFCRACLDREQTHPDRVTCVTCRVDTQLPP 513
+C+IC D ++ C HTFCR C+ + T + TC C +D P
Sbjct: 15 SCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVCNIDLGSTP 64
>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
profile PF03105: SPX domain, weak hit to PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 335
Score = 40.7 bits (91), Expect = 9e-04
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 361 DTTCAICRETFIDPKVLNCFHTFCRAC 441
D TCAIC ET +P L C H FC +C
Sbjct: 228 DLTCAICLETVFNPYALKCGHIFCNSC 254
>At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 623
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/92 (25%), Positives = 42/92 (45%)
Frame = +1
Query: 358 LDTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQLPPGGVDSLLT 537
L+ C+IC + P C H FC C ++ ++TC+ CR +++P +
Sbjct: 125 LEIFCSICIQLPERPVTTPCGHNFCLKCFEKWAVGQGKLTCMICR--SKIPRHVAKNPRI 182
Query: 538 NLVIAAAVDQDAELLSSGRQTSSPLGSLHRLQ 633
NL + +A+ SG T++ + + R Q
Sbjct: 183 NLALVSAIRLANVTKCSGEATAAKVHHIIRNQ 214
Score = 34.3 bits (75), Expect = 0.075
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 367 TCAICRETFIDPKVLNCFHTFCRACLD 447
+C ICR+ P C H FC+ACL+
Sbjct: 497 SCQICRKVLSLPVTTPCAHNFCKACLE 523
>At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 622
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/92 (25%), Positives = 42/92 (45%)
Frame = +1
Query: 358 LDTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQLPPGGVDSLLT 537
L+ C+IC + P C H FC C ++ ++TC+ CR +++P +
Sbjct: 125 LEIFCSICIQLPERPVTTPCGHNFCLKCFEKWAVGQGKLTCMICR--SKIPRHVAKNPRI 182
Query: 538 NLVIAAAVDQDAELLSSGRQTSSPLGSLHRLQ 633
NL + +A+ SG T++ + + R Q
Sbjct: 183 NLALVSAIRLANVTKCSGEATAAKVHHIIRNQ 214
Score = 34.3 bits (75), Expect = 0.075
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 367 TCAICRETFIDPKVLNCFHTFCRACLD 447
+C ICR+ P C H FC+ACL+
Sbjct: 497 SCQICRKVLSLPVTTPCAHNFCKACLE 523
>At2g30580.1 68415.m03726 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 420
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 367 TCAICRETFIDPKVLN-CFHTFCRACLDREQTHPDRVTCVTCRVD 498
TC +C + D ++ C HTFCR C+ + T + +C C +D
Sbjct: 19 TCPLCDKLLRDATTISECLHTFCRKCIYEKITEDEIESCPVCDID 63
>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 491
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 361 DTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQLPPG--GVDSLL 534
D C +C + +P C HTFCR+CL + ++ C CR + P V L
Sbjct: 193 DFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNK--CPLCRTVIFMTPRTCAVSVTL 250
Query: 535 TNLV 546
N++
Sbjct: 251 NNII 254
>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 361 DTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQLPPG--GVDSLL 534
D C +C + +P C HTFCR+CL + ++ C CR + P V L
Sbjct: 193 DFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNK--CPLCRTVIFMTPRTCAVSVTL 250
Query: 535 TNLV 546
N++
Sbjct: 251 NNII 254
>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 361 DTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQLPPG--GVDSLL 534
D C +C + +P C HTFCR+CL + ++ C CR + P V L
Sbjct: 193 DFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNK--CPLCRTVIFMTPRTCAVSVTL 250
Query: 535 TNLV 546
N++
Sbjct: 251 NNII 254
>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 361 DTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQLPPG--GVDSLL 534
D C +C + +P C HTFCR+CL + ++ C CR + P V L
Sbjct: 193 DFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNK--CPLCRTVIFMTPRTCAVSVTL 250
Query: 535 TNLV 546
N++
Sbjct: 251 NNII 254
>At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger)
family protein contains similarity to autocrine motility
factor receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 577
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 322 DSAVCDLRDFDGLDTTCAICRETFIDPKVLNCFHTFCRACLDR--EQTHPDRVTCVTCR 492
D+ +LRD+D CAICRE K L+C H F CL +Q + +C TCR
Sbjct: 324 DATSEELRDYDD---ECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCR 379
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profiles: PF00097 zinc finger,
C3HC4 type (RING finger), PF01697 Domain of unknown
function
Length = 913
Score = 37.9 bits (84), Expect = 0.006
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Frame = +1
Query: 361 DTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQLPPGG----VDS 528
+ +CAIC E +P C H+FC+ CL R C CR QL G V++
Sbjct: 721 ELSCAICLEICFEPSTTTCGHSFCKKCL-RSAADKCGRKCPKCR---QLIGNGRYCTVNT 776
Query: 529 LLTNLV-IAAAVDQDAELLSS----GRQTSSPLGSLHRLQ 633
+L N + + + +A+ +S G++T SP RL+
Sbjct: 777 VLWNTIQLLFPKEVEAQRAASANLKGKETPSPRNPNQRLR 816
>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 492
Score = 37.9 bits (84), Expect = 0.006
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Frame = +1
Query: 361 DTTCAICRETFIDPKVLNC---FHTFC-RACLDREQTHPD-RVTCVTCRVDTQLPPGGVD 525
D TC ICRE + K L C FH C R+ L+R+QT P R V T PG +
Sbjct: 289 DATCIICREEMTNAKKLICGHLFHVHCLRSWLERQQTCPTCRALVVPPENATSAAPGQRE 348
Query: 526 -SLLTNLVIAAAVDQDAELLSSGRQTSSPLGSLH-RLQ 633
+ +++ +Q +E+ SS +++ L H RLQ
Sbjct: 349 LHQGSQQGTSSSGNQGSEISSSAGVSNNSLSRHHARLQ 386
>At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 617
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +1
Query: 358 LDTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQLPPGGVDSLLT 537
L+ C+IC + P C H FC C ++ ++TC+ CR +++P +
Sbjct: 125 LEIFCSICIQLPERPITTPCGHNFCLKCFEKWAVGQGKLTCMICR--SKIPRHVAKNPRI 182
Query: 538 NLVIAAAV 561
NL + +A+
Sbjct: 183 NLALVSAI 190
Score = 35.9 bits (79), Expect = 0.025
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 367 TCAICRETFIDPKVLNCFHTFCRACLD 447
+C ICRE P C H FC+ACL+
Sbjct: 494 SCQICREVLSLPVTTPCAHNFCKACLE 520
>At4g09110.1 68417.m01503 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 302
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +1
Query: 370 CAICRETFIDPKVLN----CFHTFCRACLDREQTHPDRVTCVTCRVDTQLPPG 516
CAIC F+D + L C HTF C+D + + TC CR + L PG
Sbjct: 123 CAICLSEFVDKETLRWMPPCSHTFHANCIDVWLS--SQSTCPACRANLSLKPG 173
>At3g61460.1 68416.m06883 zinc finger (C3HC4-type RING finger)
family protein (BRH1) identical to BRH1 RING finger
protein [Arabidopsis thaliana] GI:4689366; identical to
cDNA BRH1 RING finger protein, GI:4689365
Length = 170
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +1
Query: 352 DGLDTTCAICRETFIDPKVL----NCFHTFCRACLDREQTHPDRVTCVTCR 492
+ L CA+C F + + NC H F R+CLDR H D+ TC CR
Sbjct: 88 EDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDH-DQKTCPLCR 137
>At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger)
family protein low similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 427
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 319 SDSAVCDLRDFDGLDTTCAICRETFIDPK-VLNCFHTFCRACLDREQTHPDRVTCVTCR 492
S+ V DL D D C+IC + V+ C H FCR C+D+ + C TCR
Sbjct: 87 SEYMVVDLADICK-DVQCSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNN-ECPTCR 143
>At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427, gpStaf50
[Homo sapiens] GI:899300; contains Pfam profiles
PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 335
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 334 CDLRDFD--GLDTTCAICRETFIDPKVLNCFHTFCRAC 441
C+L D +D TC+IC +T DP L C H +C C
Sbjct: 217 CELSDSVKVDIDLTCSICLDTVFDPISLTCGHIYCYMC 254
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 370 CAICRETFIDPKVLN-CFHTFCRACLDREQTHPDRV-TCVTCRVDTQLPP 513
C IC F D ++ C HTFCR+C+ R + +RV C C V+ + P
Sbjct: 16 CPICTNPFKDATTISECLHTFCRSCI-RNKFINERVNACPVCNVNLGVFP 64
>At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 425
Score = 37.1 bits (82), Expect = 0.011
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Frame = +1
Query: 235 SLP-GANSIGSLERG-SISPLTLSGSSPPASDSAVCDLRDF------DGLDTTCAICRET 390
+LP G S+ S ER S +GS A D+ + RD DG C IC +
Sbjct: 88 ALPAGEGSMASGERVIEDSKKCENGSKVMAEDNVTEEKRDVEKSVGSDGSFFDCYICLDL 147
Query: 391 FIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
DP V NC H +C +CL + + C C+
Sbjct: 148 SKDPVVTNCGHLYCWSCLYQWLQVSEAKECPVCK 181
>At5g41400.1 68418.m05030 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHA1a
[Arabidopsis thaliana] GI:3790554; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 176
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +1
Query: 370 CAICRETFIDP----KVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
CA+C F + ++ NC H F R+CLDR +++TC CR
Sbjct: 105 CAVCLHEFENDDEIRRLTNCQHIFHRSCLDRWMMGYNQMTCPLCR 149
>At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 426
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
CAIC+E P +L C H FC C+ E +R TC CR
Sbjct: 365 CAICQEKMHTPILLRCKHMFCEDCVS-EWFERER-TCPLCR 403
>At4g35480.1 68417.m05042 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 200
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +1
Query: 283 SPLTLSGSSPPASDSAVCDLRDFDGLDTTCAICRETFIDPKVLN----CFHTFCRACLDR 450
S T S S+ A+D C T CAIC F + + + C H F AC+D+
Sbjct: 84 STYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDK 143
Query: 451 EQTHPDRVTCVTCR 492
T R +C +CR
Sbjct: 144 WLT--SRSSCPSCR 155
>At1g69330.1 68414.m07954 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 270
Score = 36.3 bits (80), Expect = 0.019
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Frame = +1
Query: 247 ANSIGSLERGSISPLTLSGSSPPASDSAVCDL-RDFDGLDTTCAICRETF--ID--PKVL 411
+N IGS+ SP + +S SD V ++ RD +GL+ C IC E+F ++ P VL
Sbjct: 6 SNVIGSMGLKK-SPKDSAQASSQCSDDEVSNISRDEEGLE--CPICWESFNIVENVPYVL 62
Query: 412 NCFHTFCRACL 444
C HT C+ C+
Sbjct: 63 WCGHTLCQNCV 73
>At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger)
family protein similar to autocrine motility factor
receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 578
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 361 DTTCAICRETFIDPKVLNCFHTFCRACLDR--EQTHPDRVTCVTCR 492
D CAICRE K L+C H F CL +Q + +C TCR
Sbjct: 334 DDECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCR 379
>At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger)
family protein similar to autocrine motility factor
receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 578
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 361 DTTCAICRETFIDPKVLNCFHTFCRACLDR--EQTHPDRVTCVTCR 492
D CAICRE K L+C H F CL +Q + +C TCR
Sbjct: 334 DDECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCR 379
>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P31244 DNA
repair protein RAD16 {Saccharomyces cerevisiae};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 638
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 364 TTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQL 507
TTC++C + DP V C H FC C+ + D TC +QL
Sbjct: 393 TTCSVCSDPPKDPVVTLCGHVFCYECVS-VNINGDNNTCPALNCHSQL 439
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 35.9 bits (79), Expect = 0.025
Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +1
Query: 298 SGSSPPASDSAVCDLRDFDGLDTTCAICRETFIDPKVLNCFHTFCRACLDR-EQTHPDRV 474
S +S SDS D D G D C IC E DP V C H FC CL R H
Sbjct: 6 SSTSTSYSDSNN-DTNDQGG-DFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQ 63
Query: 475 TCVTCRVDTQ 504
C C+ Q
Sbjct: 64 ECPVCKAVVQ 73
>At1g63840.1 68414.m07226 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHA1a
(GI:3790554) [Arabidopsis thaliana]' similar to BRH1
RING finger protein [Arabidopsis thaliana] GI:4689366;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 166
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +1
Query: 370 CAICRETFIDP----KVLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQLPP 513
CA+C F + ++ NC H F R CLDR +++TC CR TQ P
Sbjct: 89 CAVCLYDFENDDEIRRLTNCRHIFHRGCLDRWMMGYNQMTCPLCR--TQFIP 138
>At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger C3HC4 type (RING finger), PF02182: YDG/SRA
domain
Length = 465
Score = 35.5 bits (78), Expect = 0.033
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 361 DTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
D C++C + P + C H FC C D+ +++ C TCR
Sbjct: 106 DLNCSLCNQLPDRPVTILCGHNFCLKCFDKWIDQGNQI-CATCR 148
>At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 219
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +1
Query: 355 GLDTTCAICRETFIDP---KVL-NCFHTFCRACLDR-EQTHPDRVTCVTCRVDT 501
GLDT CAIC F+ K+L C H F C+D+ +H TC C + T
Sbjct: 126 GLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQT 179
>At5g46650.1 68418.m05748 zinc finger (C3HC4-type RING finger)
family protein contains similarity to RING-H2 zinc
finger protein ATL6 [Arabidopsis thaliana] GI:4928403;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 289
Score = 34.7 bits (76), Expect = 0.057
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Frame = +1
Query: 325 SAVCDLRDFDGLDTTCAICRETFIDPKVL-----NCFHTFCRACLDREQTHPDRVTCVTC 489
S+V DLR+ D CAIC F + +L C+H F + C+D Q TC C
Sbjct: 100 SSVKDLRE-DKYGLECAICLLEFEEEHILLRLLTTCYHVFHQECID--QWLESNKTCPVC 156
Query: 490 R--VDTQLPPGGVDSLLTNLVIAAAVDQDAELLSSGRQ 597
R +D P + ++ + A ++D E S+ +
Sbjct: 157 RRNLDPNAPENIKELIIEVIQENAHENRDQEQTSTSNE 194
>At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 281
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/44 (43%), Positives = 20/44 (45%)
Frame = +1
Query: 361 DTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
D TC ICRE K L C H F CL + TC TCR
Sbjct: 110 DATCIICREEMTSAKKLVCGHLFHVHCLRSWLERQN--TCPTCR 151
>At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 389
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/44 (43%), Positives = 20/44 (45%)
Frame = +1
Query: 361 DTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
D TC ICRE K L C H F CL + TC TCR
Sbjct: 218 DATCIICREEMTSAKKLVCGHLFHVHCLRSWLERQN--TCPTCR 259
>At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 660
Score = 34.7 bits (76), Expect = 0.057
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACLD 447
C IC++ +P C H FC+ACL+
Sbjct: 528 CQICQKVMTNPVTTPCAHNFCKACLE 553
>At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger)
family protein contains similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 486
Score = 34.3 bits (75), Expect = 0.075
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +1
Query: 283 SPLTLSGSSPPASDSAVCDLRDFDGLDTTCAICRETFIDPK-VLNCFHTFCRACLDREQT 459
SP ++SG + + ++R D C IC + V+ C H FCR C+D+
Sbjct: 111 SPSSISGDQSEFMEIDLGEIRK----DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR 166
Query: 460 HPDRVTCVTCR 492
+ C CR
Sbjct: 167 LGNN-ECPACR 176
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 33.9 bits (74), Expect = 0.100
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 352 DGLDTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
DG D C IC + + C H FCRAC+ + + C CR
Sbjct: 610 DGEDFDCPICISPPTNIIITRCAHIFCRACI-LQTLQRSKPLCPLCR 655
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 33.9 bits (74), Expect = 0.100
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 355 GLDTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRV 495
G + C IC + L+C H FC AC+ + TC C++
Sbjct: 346 GRELKCPICLSLYNSAVSLSCNHVFCNACIVKSMKMD--ATCPVCKI 390
>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 641
Score = 33.9 bits (74), Expect = 0.100
Identities = 39/124 (31%), Positives = 51/124 (41%), Gaps = 7/124 (5%)
Frame = +1
Query: 241 PGANSIGSLERGSISPLTL-SGSSPPASDSAVCDLRDFDGLDTTCAICRETFI--DPKVL 411
P + S R S+ P S SS P S + LR G CAIC D K +
Sbjct: 28 PSSPSPSDASRSSVDPNRPDSSSSRPGSTPSSSGLRFSKG---RCAICLYEIRKEDGKAI 84
Query: 412 ---NCFHTFCRACLDREQTHPDRVTCVTCRVD-TQLPPGGVDSLLTNLVIAAAVDQDAEL 579
C H+F C+ H +R+ C CR Q+P VDS+ T +A +D E
Sbjct: 85 FTAECSHSFHFDCITSNVKHGNRI-CPLCRTQWKQVPLCDVDSVPT--FVAQRGFEDDEP 141
Query: 580 LSSG 591
L G
Sbjct: 142 LPQG 145
>At4g11360.1 68417.m01832 zinc finger (C3HC4-type RING finger)
family protein (RHA1b) identical to RING-H2 finger
protein RHA1b [Arabidopsis thaliana] GI:3790567
Length = 157
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +1
Query: 370 CAICRETFI-DPKVLN---CFHTFCRACLDREQTHPDRVTCVTCR 492
C +C F+ D K+ C H F CLDR +++TC CR
Sbjct: 85 CTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCPICR 129
>At4g10940.1 68417.m01779 PHD finger family protein contains Pfam
profile: PF00097 zinc finger, C3HC4 type
Length = 192
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCF-HTFCRACLDREQTHPDRVTCVTCRVDTQL 507
C IC + ID VL+C H FC C+D T + C C+ + QL
Sbjct: 31 CGICMDIIIDRGVLDCCQHWFCFECIDNWSTIMN--LCPLCQREFQL 75
>At4g09120.1 68417.m01505 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 345
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +1
Query: 370 CAICRETFIDPKVLN----CFHTFCRACLDREQTHPDRVTCVTCRVDTQLPPG 516
CAIC F D + L C HTF C+D + TC CR + L PG
Sbjct: 123 CAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWS--TCPVCRANLSLKPG 173
>At1g61620.1 68414.m06943 expressed protein contains Pfam profile:
PF01363 FYVE zinc finger
Length = 310
Score = 33.1 bits (72), Expect = 0.17
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACL 444
C++C + FIDP + H FCR C+
Sbjct: 43 CSLCLKPFIDPMCCHKGHVFCRECI 67
>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 642
Score = 33.1 bits (72), Expect = 0.17
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACLD 447
C IC++ P C H FC+ACL+
Sbjct: 515 CQICQQVLTLPVTTPCAHNFCKACLE 540
>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 645
Score = 33.1 bits (72), Expect = 0.17
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACLD 447
C IC++ P C H FC+ACL+
Sbjct: 518 CQICQQVLTLPVTTPCAHNFCKACLE 543
>At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 367 TCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
TC IC F + C H FC+ C+ + + C TCR
Sbjct: 147 TCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGK--CPTCR 186
>At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 367 TCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
TC IC F + C H FC+ C+ + + C TCR
Sbjct: 147 TCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGK--CPTCR 186
>At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 367 TCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
TC IC F + C H FC+ C+ + + C TCR
Sbjct: 147 TCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGK--CPTCR 186
>At4g00305.1 68417.m00038 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 126
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +1
Query: 367 TCAICRETFI---DPKVL-NCFHTFCRACLDREQTHPDRVTCVTCR 492
+C IC++ F + + L NC H + + C+DR D++TC CR
Sbjct: 70 SCRICQDEFDGGDEVRCLRNCVHVYHKTCIDR-WIQDDKMTCPLCR 114
>At1g71980.1 68414.m08320 protease-associated zinc finger
(C3HC4-type RING finger) family protein identical to
ReMembR-H2 protein JR702 [Arabidopsis thaliana]
gi|6942149|gb|AAF32326; contains Pfam domain, PF02225:
protease-associated (PA) domain and Pfam domain,
PF00097: Zinc finger, C3HC4 type (RING finger);
identical to cDNA ReMembR-H2 protein JR702 mRNA, partial
cds GI:6942148
Length = 448
Score = 32.7 bits (71), Expect = 0.23
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = +1
Query: 367 TCAICRETFI---DPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQLPPGGVD-SLL 534
TCAIC E + ++L C H F AC+D T R C C+ D + G S
Sbjct: 231 TCAICLEDYTVGDKLRLLPCCHKFHAACVDSWLT-SWRTFCPVCKRDARTSTGEPPASES 289
Query: 535 TNLVIAAAVDQDAELLSSGRQTSSPL 612
T L+ +AA + L S ++S+ L
Sbjct: 290 TPLLSSAASSFTSSSLHSSVRSSALL 315
>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +1
Query: 337 DLRDFDGLDTTCAICRETFIDPKVLNCFHTFCRACLDR-EQTHPDRVTCVTCR 492
D + D + C IC + DP V C H FC CL + H C C+
Sbjct: 12 DTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKDCPVCK 64
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1029
Score = 32.3 bits (70), Expect = 0.30
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Frame = +1
Query: 274 GSISPLTLSGSSPPAS---DSAVCDLRDFDGLDTTCAICRETFIDPKVLNCFHTFCRACL 444
G S L G P+ V +LR G C IC E D + C H CR CL
Sbjct: 761 GKSSGLEREGKDVPSEAFVQEVVEELRK--GEQGECPICLEALEDAVLTPCAHRLCRECL 818
Query: 445 DREQTHPDRVTCVTCR 492
+ C CR
Sbjct: 819 LASWRNSTSGLCPVCR 834
>At5g12310.1 68418.m01447 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 254
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 370 CAICRETFI---DPKVLNCFHTFCRACLDREQTHPDRVTCVTCRV 495
CAIC +T V C H +C C+ R ++ ++ TC C++
Sbjct: 43 CAICLDTIPLQETAMVKGCEHAYCVTCILRWASYKEKPTCPQCKL 87
>At3g54360.1 68416.m06008 expressed protein DNA-binding Mel-18
protein, Homo sapiens, PIR:JN0717
Length = 405
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +1
Query: 259 GSLERGSISPLTLSGSSPPASDSAVCDLRDFDGLDTTCAICRETFIDP-KVLNCFHTFCR 435
G+L + S T+ P DS L F +C +C+ + + + C H FC+
Sbjct: 76 GNLNKDSTDSATVPAKCPFGYDSQTFKLGPF-----SCMLCQALLYESSRCVPCTHVFCK 130
Query: 436 ACLDREQTHP 465
CL R + P
Sbjct: 131 VCLTRFKDCP 140
>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 772
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 265 LERGSISPLTLSGSSPPASDSAVCDLRDFDGLDTTCAICRETFIDPKVLNCFHTFCRACL 444
L+ G SP ++ D +C +R C IC E + P++ +C H FC C+
Sbjct: 211 LDTGDHSPDSMDPDKMLQWDDIIC-VRYSTPSPVQCPICLEYPLCPQITSCGHIFCFPCI 269
>At5g13530.1 68418.m01562 protein kinase family protein / ankyrin
repeat family protein contains similarity to
ankyrin-related gene UNC-44 gi|790608|gb|AAA85854;
contains Pfam domains PF00023: Ankyrin repeat and
PF00069: Protein kinase domain
Length = 834
Score = 31.5 bits (68), Expect = 0.53
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Frame = +1
Query: 370 CAICRETFID----PKVLNCFHTFCRACLDRE-QTHPD-RVTCVTCRVDTQLPPGGVDSL 531
C++C + + P +L C H FC+ CL + T D +TC CR + V L
Sbjct: 10 CSVCHTRYNEDERVPLLLQCGHGFCKDCLSKMFSTSSDTTLTCPRCR-HVSVVGNSVQGL 68
Query: 532 LTNLVIAAAV 561
N + A +
Sbjct: 69 RKNYAMLALI 78
>At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 302
Score = 31.5 bits (68), Expect = 0.53
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +1
Query: 370 CAICRETFIDPKVLN----CFHTFCRACLDREQTHPDRVTCVTCRVDTQLPPG 516
CA+C F D + L C H F C+ + D TC CRVD L PG
Sbjct: 96 CAVCICEFEDHETLRLMPECCHVFHADCVSVWLS--DHSTCPLCRVDLCLQPG 146
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/66 (28%), Positives = 26/66 (39%)
Frame = +2
Query: 212 PHAPRPLSRCPVPTQ*VRWSVAPYRPSLSAVHHPLRATPPYVIYATSTDSIPLAPSAVRH 391
P P P+ + P PT P +P P++ PP T T S P+ P +
Sbjct: 502 PVKPPPIQKPPTPTYSPPIKPPPVKPPTPTYSPPIK-PPPVHKPPTPTYSPPIKPPPIHK 560
Query: 392 SSTPKY 409
TP Y
Sbjct: 561 PPTPTY 566
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +2
Query: 212 PHAPRPLSRCPVPTQ*VRWSVAPYRPSLSAVHHPLRATPPYVIYATSTDSIPLAPSAVRH 391
P P PL + P PT + P +P + ++ P PP T S P+ P V
Sbjct: 402 PIKPPPLQKPPTPTYSPPIKLPPVKPP-TPIYSPPVKPPPVHKPPTPIYSPPVKPPPVHK 460
Query: 392 SSTPKY 409
TP Y
Sbjct: 461 PPTPTY 466
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = +2
Query: 212 PHAPRPLSRCPVPTQ*VRWSVAPYRPSLSAVHHPLRATPPYVIYATSTDSIPLAPSAVRH 391
P P P+ + P PT P + + + P PP + T T S P+ P V+
Sbjct: 637 PIKPPPVHKPPTPTYSPPIKPPPVQKPPTPTYSPPVKPPPVQLPPTPTYSPPVKPPPVQV 696
Query: 392 SSTPKY 409
TP Y
Sbjct: 697 PPTPTY 702
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = +2
Query: 212 PHAPRPLSRCPVPTQ*VRWSVAPYRPSLSAVHHPLRATPPYVIYATSTDSIPLAPSAVRH 391
P P P+ + P PT P + + + P PP + T T S P+ P V+
Sbjct: 654 PIKPPPVQKPPTPTYSPPVKPPPVQLPPTPTYSPPVKPPPVQVPPTPTYSPPVKPPPVQV 713
Query: 392 SSTPKY 409
TP Y
Sbjct: 714 PPTPTY 719
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = +2
Query: 212 PHAPRPLSRCPVPTQ*VRWSVAPYRPSLSAVHHPLRATPPYVIYATSTDSIPLAPSAVRH 391
P P P+ + P PT P +P P++ PP T T S P+ P ++
Sbjct: 452 PVKPPPVHKPPTPTYSPPIKPPPVKPPTPTYSPPVQP-PPVQKPPTPTYSPPVKPPPIQK 510
Query: 392 SSTPKY 409
TP Y
Sbjct: 511 PPTPTY 516
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/66 (28%), Positives = 26/66 (39%)
Frame = +2
Query: 212 PHAPRPLSRCPVPTQ*VRWSVAPYRPSLSAVHHPLRATPPYVIYATSTDSIPLAPSAVRH 391
P P P+ + P PT P + + + P PP + T T S P+ P V
Sbjct: 115 PIYPPPIQKPPTPTYSPPIYPPPIQKPPTPSYSPPVKPPPVQMPPTPTYSPPIKPPPVHK 174
Query: 392 SSTPKY 409
TP Y
Sbjct: 175 PPTPTY 180
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/66 (28%), Positives = 24/66 (36%)
Frame = +2
Query: 212 PHAPRPLSRCPVPTQ*VRWSVAPYRPSLSAVHHPLRATPPYVIYATSTDSIPLAPSAVRH 391
P P P+ + P PT P + + P PP T T S P+ P V
Sbjct: 552 PIKPPPIHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVHK 611
Query: 392 SSTPKY 409
TP Y
Sbjct: 612 PPTPTY 617
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/66 (28%), Positives = 25/66 (37%)
Frame = +2
Query: 212 PHAPRPLSRCPVPTQ*VRWSVAPYRPSLSAVHHPLRATPPYVIYATSTDSIPLAPSAVRH 391
P P P+ + P PT P + + P PP T T S P+ P V+
Sbjct: 603 PIKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVQK 662
Query: 392 SSTPKY 409
TP Y
Sbjct: 663 PPTPTY 668
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = +2
Query: 212 PHAPRPLSRCPVPTQ*VRWSVAPYRPSLSAVHHPLRATPPYVIYATSTDSIPLAPSAVRH 391
P P P+ + P PT P + + + P PP T T S P+ P ++
Sbjct: 81 PIYPPPIQKPPTPTYSPPIYPPPIQKPPTPTYSPPIYPPPIQKPPTPTYSPPIYPPPIQK 140
Query: 392 SSTPKY 409
TP Y
Sbjct: 141 PPTPSY 146
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/66 (28%), Positives = 24/66 (36%)
Frame = +2
Query: 212 PHAPRPLSRCPVPTQ*VRWSVAPYRPSLSAVHHPLRATPPYVIYATSTDSIPLAPSAVRH 391
P P P+ + P PT P + + P PP T T S P+ P V
Sbjct: 535 PIKPPPVHKPPTPTYSPPIKPPPIHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVHK 594
Query: 392 SSTPKY 409
TP Y
Sbjct: 595 PPTPTY 600
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/66 (28%), Positives = 24/66 (36%)
Frame = +2
Query: 212 PHAPRPLSRCPVPTQ*VRWSVAPYRPSLSAVHHPLRATPPYVIYATSTDSIPLAPSAVRH 391
P P P+ + P PT P + + P PP T T S P+ P V
Sbjct: 569 PIKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVHK 628
Query: 392 SSTPKY 409
TP Y
Sbjct: 629 PPTPTY 634
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/66 (28%), Positives = 24/66 (36%)
Frame = +2
Query: 212 PHAPRPLSRCPVPTQ*VRWSVAPYRPSLSAVHHPLRATPPYVIYATSTDSIPLAPSAVRH 391
P P P+ + P PT P + + P PP T T S P+ P V
Sbjct: 586 PIKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVHK 645
Query: 392 SSTPKY 409
TP Y
Sbjct: 646 PPTPTY 651
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/66 (28%), Positives = 25/66 (37%)
Frame = +2
Query: 212 PHAPRPLSRCPVPTQ*VRWSVAPYRPSLSAVHHPLRATPPYVIYATSTDSIPLAPSAVRH 391
P P P+ + P PT P + + P PP T T S P+ P V+
Sbjct: 620 PIKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVQKPPTPTYSPPVKPPPVQL 679
Query: 392 SSTPKY 409
TP Y
Sbjct: 680 PPTPTY 685
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/66 (28%), Positives = 26/66 (39%)
Frame = +2
Query: 212 PHAPRPLSRCPVPTQ*VRWSVAPYRPSLSAVHHPLRATPPYVIYATSTDSIPLAPSAVRH 391
P P P+ + P PT P +P + ++ P PP T S P+ P V
Sbjct: 318 PIKPPPVQKPPTPTYSPPIKPPPVKPP-TPIYSPPVKPPPVHKPPTPIYSPPVKPPPVHK 376
Query: 392 SSTPKY 409
TP Y
Sbjct: 377 PPTPIY 382
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +2
Query: 212 PHAPRPLSRCPVPTQ*VRWSVAPYRPSLSAVHHPLRATPPYVIYATSTDSIPLAPSAVRH 391
P P P+ P PT P + + + P PP + T T S P+ P V+
Sbjct: 671 PVKPPPVQLPPTPTYSPPVKPPPVQVPPTPTYSPPVKPPPVQVPPTPTYSPPIKPPPVQV 730
Query: 392 SSTP 403
TP
Sbjct: 731 PPTP 734
>At2g25380.1 68415.m03039 zinc finger protein-related very low
similarity to SP|O95376 Ariadne-2 protein homolog
(ARI-2) (Triad1 protein) {Homo sapiens}; contains Pfam
profile PF01485: IBR (In Between Ring fingers) domain
Length = 350
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 319 SDSAVCDLRDFDGLDTTCAICRETFIDPKVL---NCFHTFCRACLDREQTHPDRVTCVTC 489
S S+ ++++ G TC IC E + ++ C H +C +C+ + + + C+ C
Sbjct: 185 SKSSSVNVKEAQG--ETCVICLEETVADRMFFTDKCLHRYCFSCVKQTCVKCNGLFCIDC 242
Query: 490 RV 495
+V
Sbjct: 243 KV 244
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQL 507
C +C + DP V C H FC C+ + D TC R QL
Sbjct: 679 CCVCHDPPEDPVVTLCGHIFCYQCVS-DYITGDEDTCPAPRCREQL 723
>At1g49220.1 68414.m05518 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 251
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +1
Query: 355 GLDTTCAICRETFIDPKVL----NCFHTFCRACLDR-EQTHPDRVTCVTCRVDT 501
GLD C IC F+ + L C H F C+D+ Q H C C V+T
Sbjct: 130 GLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVET 183
>At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 193
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 355 GLDTTCAICRETFIDPKVLNCFHTFCRACLDR 450
G D C IC + DP V C H FC C+ +
Sbjct: 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHK 47
>At1g65430.1 68414.m07423 zinc finger protein-related contains weak
similarity to zinc finger proteins and a Pfam:PF01485
IBR domain
Length = 567
Score = 31.1 bits (67), Expect = 0.70
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = +1
Query: 352 DGLDTTCAICRETFIDPKV--LNCFHTFCRACLDREQTHP--DRVTCVTCRVDTQLPPGG 519
DG + C IC ETF+ K+ C H FC +C + T D C+T R
Sbjct: 123 DG-ELDCGICFETFLSDKLHAAACGHPFCDSCWEGYITTAINDGPGCLTLRCPDPSCRAA 181
Query: 520 VDSLLTNLVIAAAVDQDAELLSS 588
V + NL+ A D+D + +S
Sbjct: 182 VGQDMINLL---APDKDKQKYTS 201
>At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 243
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACL 444
C IC +T DP V C H FC C+
Sbjct: 44 CNICLDTAHDPVVTLCGHLFCWPCI 68
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 355 GLDTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTC 489
G D+ C +C + C HTFCR C + +R +C C
Sbjct: 161 GNDSVCCVCMGRKKGAAFIPCGHTFCRVC--SRELWLNRGSCPLC 203
>At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 371
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 301 GSSPPASDSAVCDLRDFDGLDTTCAICRETFI--DPK-VLNCFHTFCRACL 444
GSS +S + V D + D C+IC E F DP V +C H + C+
Sbjct: 23 GSSSSSSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCI 73
>At3g30460.1 68416.m03854 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 147
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 370 CAICRETFIDPKVLN---CFHTFCRACLDREQTHPDRVTCVTCRVDTQLPPGG 519
CAICRE + L+ C H + + C+ ++ R TC CR + +LP G
Sbjct: 97 CAICREELAANERLSELPCRHYYHKECISNWLSN--RNTCPLCRHNVELPNHG 147
>At2g21420.1 68415.m02549 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 468
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 313 PASDSAVCDLRDFDGLDTTCAICRETFIDPKVL---NCFHTFCRACLDR 450
P +D + + G TC ICRE ++ NCFH C +C++R
Sbjct: 170 PRADVIILAIEAIGG--ETCCICRENTDADRMFFTENCFHRQCFSCVNR 216
>At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 30.7 bits (66), Expect = 0.93
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACL 444
C+IC F P NC H FC C+
Sbjct: 10 CSICHSHFTAPCQANCSHWFCGNCI 34
>At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 346 DFDGLDTTCAICRETFIDPKVLNCFHTFCRACLDR 450
D D + C IC ++ +P V C H FC C+ +
Sbjct: 40 DTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHK 74
>At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 346 DFDGLDTTCAICRETFIDPKVLNCFHTFCRACLDR 450
D D + C IC ++ +P V C H FC C+ +
Sbjct: 40 DTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHK 74
>At2g44330.1 68415.m05514 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 180
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = +1
Query: 370 CAICRETFI---DPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQLPPGGVDSLLTN 540
CAICRE F+ + L C H + C+ T + +C CRV+ + DS L
Sbjct: 96 CAICREDFVVGESARRLPCNHLYHNDCIIPWLTSHN--SCPLCRVELPVASSEDDSGLDM 153
Query: 541 LVIAAAVDQDAE 576
A ++ D E
Sbjct: 154 WFDALNLEDDLE 165
>At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domains PF00533: BRCA1 C Terminus (BRCT) domain and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 453
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = +1
Query: 367 TCAICRETFIDPK-VLNCFHTFCRACL----DREQTHPDRVTCVTCR 492
+C IC F + +L C H FC +C+ DR + + TC C+
Sbjct: 299 SCIICWTEFSSSRGILPCGHRFCYSCIQKWADRLVSERKKTTCPLCK 345
>At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 355 GLDTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTC 489
G D C +C + C HT+CR C + +R TC C
Sbjct: 151 GNDPLCCVCMGREKGAAFIPCGHTYCRVC--SREIWMNRGTCPLC 193
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Frame = +1
Query: 361 DTTCAICRETFIDPKVLNCFHTFCRAC-LDREQTHPDRVTCVTCRVDTQLPPGGVDSLLT 537
D C IC + D + C H+FC C + + D C + QL P + L
Sbjct: 49 DLLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLDKLL 108
Query: 538 NLVIAAAVDQDAELLSSGRQ 597
A V + A L R+
Sbjct: 109 KKTSARHVSKTASPLDQFRE 128
>At2g17450.1 68415.m02014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +1
Query: 352 DGLDTTCAICRETFIDPKVLN----CFHTFCRACLDREQTHPDRVTCVTCR 492
+G T CAIC F D + + C H+F C+D+ R +C +CR
Sbjct: 96 EGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLV--SRSSCPSCR 144
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 29.9 bits (64), Expect = 1.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACLDR 450
C +C + + ++ C+H FC+ C+ R
Sbjct: 331 CGVCFDRPKEVVIVKCYHLFCQQCIQR 357
>At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 352 DGLDTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
DG C IC + +P + C H +C CL + D C C+
Sbjct: 133 DGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVCK 179
>At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 352 DGLDTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
DG C IC + +P + C H +C CL + D C C+
Sbjct: 133 DGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVCK 179
>At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 352 DGLDTTCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
DG C IC + +P + C H +C CL + D C C+
Sbjct: 133 DGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVCK 179
>At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 713
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 358 LDTTCAICRETFIDPKVLNCFHTFCRACLDR 450
L+ C +C + P +L C H FC +C+ +
Sbjct: 21 LELKCPLCLKLLNRPVLLPCDHVFCDSCVHK 51
>At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 714
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 358 LDTTCAICRETFIDPKVLNCFHTFCRACLDR 450
L+ C +C + P +L C H FC +C+ +
Sbjct: 21 LELKCPLCLKLLNRPVLLPCDHVFCDSCVHK 51
>At5g37230.1 68418.m04472 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHA3b, Arabidopsis thaliana, PIR:T41745 [gi:3790575];
contains Pfam domain zinc finger, C3HC4 type (RING
finger) PF00097
Length = 208
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Frame = +1
Query: 352 DGLDTTCAICRETFI---DPKVL---NCFHTFCRACL 444
D +TTC+IC E F D ++ +CFH F ++C+
Sbjct: 147 DEEETTCSICMEDFSESHDDNIILLPDCFHLFHQSCI 183
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 352 DGLDTTCAICRETFIDPKVLN-CFHTFCRACL 444
D ++ C IC D L C H FC+ACL
Sbjct: 1558 DEIEVECPICLSEVDDGYSLEGCSHLFCKACL 1589
>At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 137
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACLDR-EQTHPDRVTCVTCRV----DTQLPPGGV 522
C IC E +P V C H FC CL + H C C+ DT +P G+
Sbjct: 19 CNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVCKALVKEDTLVPLYGM 74
>At1g22670.1 68414.m02833 protease-associated zinc finger
(C3HC4-type RING finger) family protein contains Pfam
domain, PF02225: protease-associated (PA) domain and
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger); similar to ReMembR-H2 protein JR702
[Arabidopsis thaliana] gi|6942149|gb|AAF32326
Length = 422
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 367 TCAICRETFI---DPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQ 504
+CAIC E +I +VL C H F AC+D R C C+ D +
Sbjct: 231 SCAICLEDYIVGDKLRVLPCSHKFHVACVD-SWLISWRTFCPVCKRDAR 278
>At5g37270.1 68418.m04477 zinc finger (C3HC4-type RING finger)
family protein ow similarity to RING-H2 finger protein
RHA3b [gi:3790575], RHA1a [gi:3790554]; contains Pfam
domain zinc finger, C3HC4 type (RING finger) PF00097
Length = 208
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Frame = +1
Query: 352 DGLDTTCAICRETFI---DPKVL---NCFHTFCRACL 444
D +TTC+IC E F D ++ +CFH F ++C+
Sbjct: 147 DEEETTCSICLEDFSESHDDNIILLPDCFHLFHQSCI 183
>At4g11370.1 68417.m01833 zinc finger (C3HC4-type RING finger)
family protein strong similarity to RING-H2 finger
protein RHA1a [Arabidopsis thaliana] GI:3790554;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 159
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Frame = +1
Query: 370 CAICRETF-IDPKVLN---CFHTFCRACLDREQTHPDRVTCVTCR 492
C +C F D KV C H F CLDR +++ C CR
Sbjct: 86 CTVCLSDFESDDKVRQLPKCGHVFHHYCLDRWIVDYNKMKCPVCR 130
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 352 DGLDTTCAICRETFIDPKVLN-CFHTFCRACL 444
D ++ C IC D L C H FC+ACL
Sbjct: 1555 DEIELECPICLSEVDDGYSLEGCSHLFCKACL 1586
>At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 408
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +1
Query: 361 DTTCAICRETFIDPK----VLNCFHTFCRACLDR 450
D TC+IC + +P+ V C H FC C+ R
Sbjct: 170 DKTCSICSDDNFEPELMFSVALCGHEFCVECVKR 203
>At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 182
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 367 TCAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
+C IC F C H FC+ C+ + + C TCR
Sbjct: 126 SCPICLCPFTQEVSTKCGHIFCKKCIKNALSL--QAKCPTCR 165
>At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 878
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTC 489
C C + + + C+H FC C+ ++ T + C TC
Sbjct: 826 CKACNDRPKEVVITKCYHLFCNPCV-QKLTGTRQKKCPTC 864
>At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 1280
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/78 (24%), Positives = 27/78 (34%)
Frame = +1
Query: 256 IGSLERGSISPLTLSGSSPPASDSAVCDLRDFDGLDTTCAICRETFIDPKVLNCFHTFCR 435
+G LE + + S P + D D TC IC + + C H C
Sbjct: 1179 LGQLENFLSHLINRASSQEPERKEESFNKDTTDIEDNTCCICYAGEANAMIAPCSHRSCY 1238
Query: 436 ACLDREQTHPDRVTCVTC 489
C+ R + R C C
Sbjct: 1239 GCITRHLLNCQR--CFFC 1254
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +1
Query: 208 MASRTPSLESLPGANSIGSLERGSISP-----LTLSGSSPPASDSAVCDLRDFDGLDTTC 372
++S +PSL P ++S S S+SP L+LS SSPP + L ++
Sbjct: 78 LSSLSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSSSSS 137
Query: 373 AICRETFIDPKVLNC 417
+T +D +C
Sbjct: 138 TYSNQTNLDYIKTSC 152
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +1
Query: 202 LKMASRTPSLESLPGANSIGSLERGSISP-----LTLSGSSPP 315
L +S +PSL P ++S S S+SP L+LS SSPP
Sbjct: 27 LSPSSSSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPP 69
>At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 466
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Frame = +1
Query: 313 PASDSAVCDLR-DFDGLDTTCAICRETFIDP-KVLNCFHTFCRAC----LDREQTHPDRV 474
PA +S L+ D C+IC + D C H FC C + R + V
Sbjct: 118 PAPESRTQLLQISIDPEHAKCSICLNIWHDVVTAAPCLHNFCNGCFSEWMRRSEEKHKHV 177
Query: 475 TCVTCRVDTQ 504
C CR Q
Sbjct: 178 LCPQCRTTVQ 187
>At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACL 444
C+IC F P NC H FC C+
Sbjct: 10 CSICHGHFNAPCQSNCSHWFCGNCI 34
>At5g60590.2 68418.m07599 yrdC protein-related
Length = 288
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 238 LPGANSIGSLERGSISPLTLSGSSPPASDSAVCDLRDFDGLDTTCA 375
+P I + RGS S L L+ ++ S+VC ++DF+ L CA
Sbjct: 183 VPDCEFIREVSRGSGSVLALTSANLSGDRSSVC-VKDFENLWQHCA 227
>At5g37200.1 68418.m04466 zinc finger (C3HC4-type RING finger)
family protein low similarity to ring-H2 finger protein
RHY1a from Arabidopsis thaliana [gi:3790593], ring
finger-H2 protein from Xenopus laevis [gi:13752371];
contains Pfam domain zinc finger, C3HC4 type (RING
finger) PF00097
Length = 217
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +1
Query: 346 DFDGLDTTCAICRETFIDP-----KVLNCFHTFCRACL 444
D + D TC+IC E F + +V +C H F + CL
Sbjct: 151 DLEEEDETCSICIEKFSESHEDIIRVPDCLHLFHQGCL 188
>At5g20885.1 68418.m02480 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 176
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +1
Query: 358 LDTTCAICRETFIDP----KVLNCFHTFCRACLDR 450
++ TCA+C D ++ NC H F R C+DR
Sbjct: 78 INDTCAVCLGDLEDGDEVRELRNCSHMFHRECIDR 112
>At3g61550.1 68416.m06894 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 212
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +1
Query: 346 DFDGLDTTCAICRETFIDPKVL----NCFHTFCRACLD 447
D +G +TTC+IC +++ ++L C H F CLD
Sbjct: 128 DGEGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLD 165
>At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 199
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Frame = +1
Query: 310 PPASDSAVCDLRDFD------GLDTTCAICRETF---IDPKVLNCFHTFCRACLDREQTH 462
PPAS +A+ L+ GLD C +C++ F D + + C H + C+
Sbjct: 95 PPASLAAINSLQKIKIRQKHLGLDPYCPVCQDQFEIGSDARKMPCKHIYHSECI--LPWL 152
Query: 463 PDRVTCVTCR 492
R TC CR
Sbjct: 153 VQRNTCPVCR 162
>At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 278
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 352 DGLD-TTCAICRETFIDPKVLN-CFHTFCRACL 444
DG D C IC F+ L+ CFH FC C+
Sbjct: 15 DGSDFDPCPICLGQFLRESYLDTCFHKFCFNCI 47
>At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518 and a IBR domain,
Pfam:PF01485
Length = 316
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 343 RDFDGLDTTCAICRETFI-DPK--VLNCFHTFCRACLDRE 453
R+ D TC +C E D K V CFH FC C+ ++
Sbjct: 148 REGDVYMETCPVCYEHVTSDEKFEVPGCFHRFCFDCIKKQ 187
>At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 438
Score = 27.9 bits (59), Expect = 6.6
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Frame = +1
Query: 160 FLMHGFGLLWDAGFLKMASRTPSLESLPGANSIGSLERGSI--SPLTL-SGSSPPASDSA 330
F HG G++ ++ S P + G + SI +P+ L S +S PAS
Sbjct: 321 FNSHGIGIVLESS----PSAPPLTDDDIATVDDGPIHYPSIDSTPVDLPSAASLPASTEG 376
Query: 331 VCDLRDFDGLDTTCAICRETFIDPKVLNCFHTF-CRACLDREQTHPDRVTCVTCR 492
R DG TCAIC + + + C H C +CL ++ C CR
Sbjct: 377 E---RKEDGNTGTCAICLDAPSEAVCVPCGHVAGCMSCL--KEIKSKNWGCPVCR 426
>At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 462
Score = 27.9 bits (59), Expect = 6.6
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Frame = +1
Query: 160 FLMHGFGLLWDAGFLKMASRTPSLESLPGANSIGSLERGSI--SPLTL-SGSSPPASDSA 330
F HG G++ ++ S P + G + SI +P+ L S +S PAS
Sbjct: 345 FNSHGIGIVLESS----PSAPPLTDDDIATVDDGPIHYPSIDSTPVDLPSAASLPASTEG 400
Query: 331 VCDLRDFDGLDTTCAICRETFIDPKVLNCFHTF-CRACLDREQTHPDRVTCVTCR 492
R DG TCAIC + + + C H C +CL ++ C CR
Sbjct: 401 E---RKEDGNTGTCAICLDAPSEAVCVPCGHVAGCMSCL--KEIKSKNWGCPVCR 450
>At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 261
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = +1
Query: 370 CAICRETF--ID--PKVLNCFHTFCRACL 444
C IC E+F ++ P VL C HT C+ CL
Sbjct: 46 CPICWESFNVVENVPYVLWCGHTICKYCL 74
>At1g60280.1 68414.m06788 no apical meristem (NAM) protein-related
contains Pfam PF02365: No apical meristem (NAM) protein;
contains similarity to NAM-like protein GI:4337200 from
[Arabidopsis thaliana]
Length = 347
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 7 NSSHCSQNYLVCFINYTYEFRISEFLF*NYCSCV 108
N+ +C Q++++C I + ++ IS FL + SC+
Sbjct: 150 NNLNCKQDHVICKIRFMFDAEIS-FLLAKHFSCL 182
>At5g37250.1 68418.m04475 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHA3b [gi:3790575], RHA3a [gi:3790573]; contains Pfam
domain zinc finger, C3HC4 type (RING finger) PF00097
Length = 192
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Frame = +1
Query: 352 DGLDTTCAICRETFI---DPKVL---NCFHTFCRACL 444
D +TTC+IC E F D ++ +CFH F + C+
Sbjct: 131 DEEETTCSICLEDFSESHDDNIILLPDCFHLFHQNCI 167
>At5g27870.1 68418.m03343 pectinesterase family protein similar to
pectinesterase (EC 3.1.1.11) from Salix gilgiana
GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
vulgaris SP|Q43111; contains Pfam profile PF01095
pectinesterase
Length = 732
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 193 AGFLKMASRTPSLESLPGAN-SIGSLERGSISPLTLSGSSPPASDSA 330
AG L S TPS P A+ S S+SP +SP AS SA
Sbjct: 667 AGHLGSPSDTPSSVVTPSASPSTSPSASPSVSPSAFPSASPSASPSA 713
>At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 520
Score = 27.5 bits (58), Expect = 8.7
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Frame = +1
Query: 226 SLESLPGANSIGSLERGSISPLTLSGSSPPASDSAVCDLRDFDGLDTTCAICRETFIDPK 405
+LE G S E + L S P +C +D D C+IC+E ++D
Sbjct: 423 ALEEKMGTVSTALSEEALLKSLKSSIYRPNDESDDICLNKDDD---VKCSICQEEYVDGD 479
Query: 406 ---VLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQLPP 513
L C H + +C +Q + C C+ + P
Sbjct: 480 EVGTLPCQHKYHVSC--AQQWLRMKNWCPICKTSAESQP 516
>At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 520
Score = 27.5 bits (58), Expect = 8.7
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Frame = +1
Query: 226 SLESLPGANSIGSLERGSISPLTLSGSSPPASDSAVCDLRDFDGLDTTCAICRETFIDPK 405
+LE G S E + L S P +C +D D C+IC+E ++D
Sbjct: 423 ALEEKMGTVSTALSEEALLKSLKSSIYRPNDESDDICLNKDDD---VKCSICQEEYVDGD 479
Query: 406 ---VLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQLPP 513
L C H + +C +Q + C C+ + P
Sbjct: 480 EVGTLPCQHKYHVSC--AQQWLRMKNWCPICKTSAESQP 516
>At5g19430.1 68418.m02315 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 255
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = +1
Query: 370 CAICRETFI---DPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
CAIC V C HT+C C+ R + + TC C+
Sbjct: 46 CAICLSEIPLQETAMVKGCEHTYCVTCILRWASCKESPTCPQCK 89
>At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 262
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 361 DTTCAICRETFIDPKVLNCFHTFCRACL 444
D C IC +F P NC H +C C+
Sbjct: 71 DDVCPICFGSFTVPCRGNCGHWYCGNCI 98
>At3g60080.1 68416.m06709 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 306
Score = 27.5 bits (58), Expect = 8.7
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 6/111 (5%)
Frame = +1
Query: 184 LWDAGFLKMASRTPSLESLPGANSIGSLERGSISPLTLSGSSPPA--SDSAVCDLRDFDG 357
L D+ +L R + ++ ++S S S+ + S P S S +C D D
Sbjct: 104 LLDSPYLHRLLRHLASDNSGSSSSSSSSSSSSLLKSSDIDSIPTIQISSSLLCSTDDSDP 163
Query: 358 LDTT-CAICRETFI---DPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVD 498
CA+C+E FI + L C H + C+ D +C CR +
Sbjct: 164 DSVLLCAVCKEDFIIGESARRLPCSHIYHSDCI--VPWLSDHNSCPLCRFE 212
>At3g29270.2 68416.m03675 expressed protein
Length = 263
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Frame = +1
Query: 352 DGLDTTCAICRETF--ID--PKVLNCFHTFCRACL 444
+GL+ C IC E+F ++ P VL C HT C+ C+
Sbjct: 50 EGLE--CPICWESFNIVENVPYVLWCGHTMCKNCI 82
>At3g29270.1 68416.m03674 expressed protein
Length = 263
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Frame = +1
Query: 352 DGLDTTCAICRETF--ID--PKVLNCFHTFCRACL 444
+GL+ C IC E+F ++ P VL C HT C+ C+
Sbjct: 50 EGLE--CPICWESFNIVENVPYVLWCGHTMCKNCI 82
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCRVDTQL 507
C C E P V C H FC C+ E D TC R QL
Sbjct: 751 CYECNEPPEKPVVTLCGHIFCYECV-LEYITGDENTCPVPRCKQQL 795
>At2g44410.1 68415.m05523 expressed protein
Length = 413
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRAC 441
C IC E DP + C H FC C
Sbjct: 125 CNICLEKAEDPILTCCGHLFCWGC 148
>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
protein-related contains weak hit to Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger); weak
similarity to RING finger protein 8 (Swiss-Prot:O76064)
[Homo sapiens]
Length = 738
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = +1
Query: 361 DTTCAICRETFIDPKVLNCFH-TFCRACLDREQTHPDRVTCVTCRVDTQ 504
D C IC + + L C H C +C D + TC CR Q
Sbjct: 681 DRECLICMKDEVSVVFLPCAHQVVCASCSDSFMGS-GKATCPCCRAPVQ 728
>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
protein (PEX10) identical to zinc-binding peroxisomal
integral membrane protein GI:4337011 from [Arabidopsis
thaliana]
Length = 381
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 370 CAICRETFIDPKVLNCFHTFCRACLDREQTHPDRVTCVTCR 492
C +C T P C H FC +C+ + ++ C CR
Sbjct: 327 CTLCLSTRQHPTATPCGHVFCWSCI--MEWCNEKQECPLCR 365
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,588,214
Number of Sequences: 28952
Number of extensions: 308095
Number of successful extensions: 1132
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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