Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0615
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    29   0.84 
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   4.5  
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    25   7.8  

>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = -2

Query: 674 TKQLPAKRGWGFNSTIIASI*NLKLKLIINF 582
           TK++P++   GF+STIIAS  +L  KL+  F
Sbjct: 323 TKRVPSRIMEGFSSTIIASFSSLLKKLLTLF 353


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 460  IFFFFYFEEPRNASVVTNKIVLIKNNHNYLKYVN*NA 350
            + FFF  + PRNA + T       NN + LK+ N +A
Sbjct: 1009 VIFFFSMDLPRNAFMQTLTKFTHLNNTSELKWTNMHA 1045


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 36  YAFSCSFHR*TVANLKQNICFVSLE 110
           Y FS +  R  V ++K+ +C+V+L+
Sbjct: 198 YTFSTTAEREIVRDIKEKLCYVALD 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,653
Number of Sequences: 5004
Number of extensions: 49294
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)