Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0615
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)                     29   4.8  
SB_25814| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)                    28   8.3  

>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
          Length = 152

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/63 (22%), Positives = 36/63 (57%)
 Frame = +3

Query: 36  YAFSCSFHR*TVANLKQNICFVSLE*GCKKVTVVINLTVCNVAKIVVN*VQ*KFELIVIK 215
           Y+F+ +  R  V ++K+ +C+V+L+   + + ++I + +  +  I +  +     +I+I 
Sbjct: 77  YSFTTTAEREIVRDIKEKLCYVALDFYQEIIIIIIIIVIIIIITITIIIIIIIIIIIIII 136

Query: 216 IVI 224
           I+I
Sbjct: 137 III 139


>SB_25814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 505 TVYRISLYLLYNTLCIFF 452
           TVYR SL++LYN  C  F
Sbjct: 81  TVYRSSLFILYNNFCYKF 98


>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
          Length = 457

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = +2

Query: 365 IFQIVMIIFYKNNFICHNARVAWF 436
           +FQ ++++FYK + +  ++ +AW+
Sbjct: 281 VFQKIVLLFYKTDILSEDSIIAWY 304


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,485,527
Number of Sequences: 59808
Number of extensions: 330705
Number of successful extensions: 667
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)