Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0615
         (696 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC017710-1|AAH17710.1|  423|Homo sapiens zinc finger protein 271...    30   6.9  
BC004510-1|AAH04510.2|  272|Homo sapiens ZNF271 protein protein.       30   6.9  
AF159567-1|AAD43569.1|  423|Homo sapiens epstein-barr virus-indu...    30   6.9  
AF153201-1|AAD38056.1|  423|Homo sapiens zinc finger protein dp ...    30   6.9  
Z74696-1|CAI42428.1|  376|Homo sapiens actin-related protein T1 ...    30   9.1  
BC014597-1|AAH14597.1|  376|Homo sapiens actin-related protein T...    30   9.1  
AF440739-1|AAM00432.1|  376|Homo sapiens actin-related protein T...    30   9.1  

>BC017710-1|AAH17710.1|  423|Homo sapiens zinc finger protein 271
           protein.
          Length = 423

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 98  CVIRMRLQKSYRRDQPY-CL*CSENCSKLSAVEI 196
           C   +  QK++  ++PY C+ CS +CS+LS + I
Sbjct: 346 CTDLIEHQKTHAEEKPYQCVQCSRSCSQLSELTI 379


>BC004510-1|AAH04510.2|  272|Homo sapiens ZNF271 protein protein.
          Length = 272

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 98  CVIRMRLQKSYRRDQPY-CL*CSENCSKLSAVEI 196
           C   +  QK++  ++PY C+ CS +CS+LS + I
Sbjct: 195 CTDLIEHQKTHAEEKPYQCVQCSRSCSQLSELTI 228


>AF159567-1|AAD43569.1|  423|Homo sapiens epstein-barr virus-induced
           zinc finger protein protein.
          Length = 423

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 98  CVIRMRLQKSYRRDQPY-CL*CSENCSKLSAVEI 196
           C   +  QK++  ++PY C+ CS +CS+LS + I
Sbjct: 346 CTDLIEHQKTHAEEKPYQCVQCSRSCSQLSELTI 379


>AF153201-1|AAD38056.1|  423|Homo sapiens zinc finger protein dp
           protein.
          Length = 423

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 98  CVIRMRLQKSYRRDQPY-CL*CSENCSKLSAVEI 196
           C   +  QK++  ++PY C+ CS +CS+LS + I
Sbjct: 346 CTDLIEHQKTHAEEKPYQCVQCSRSCSQLSELTI 379


>Z74696-1|CAI42428.1|  376|Homo sapiens actin-related protein T1
           (ACTRT1) protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 21  IYLSNYAFSCSFHR*TVANLKQNICFVSLE 110
           ++ S + F C  ++  V N+K+ +C+++LE
Sbjct: 196 LFASGFNFPCILNKAVVNNIKEKLCYIALE 225


>BC014597-1|AAH14597.1|  376|Homo sapiens actin-related protein T1
           protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 21  IYLSNYAFSCSFHR*TVANLKQNICFVSLE 110
           ++ S + F C  ++  V N+K+ +C+++LE
Sbjct: 196 LFASGFNFPCILNKAVVNNIKEKLCYIALE 225


>AF440739-1|AAM00432.1|  376|Homo sapiens actin-related protein T1
           protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 21  IYLSNYAFSCSFHR*TVANLKQNICFVSLE 110
           ++ S + F C  ++  V N+K+ +C+++LE
Sbjct: 196 LFASGFNFPCILNKAVVNNIKEKLCYIALE 225


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,449,921
Number of Sequences: 237096
Number of extensions: 1448919
Number of successful extensions: 5732
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5731
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)