Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0615
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-25|CAA22109.1|  570|Caenorhabditis elegans Hypothetical...    29   2.4  
AF014939-7|AAB63929.2|  343|Caenorhabditis elegans Serpentine re...    29   2.4  
Z77655-3|CAB01134.1|  426|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine r...    28   5.5  
AC024214-16|ABA00187.1|  343|Caenorhabditis elegans Hypothetical...    28   7.3  
AC006624-2|AAF39784.2|  254|Caenorhabditis elegans Hypothetical ...    28   7.3  
L23651-4|AAU87828.2|  294|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AL033514-25|CAA22109.1|  570|Caenorhabditis elegans Hypothetical
           protein Y75B8A.25 protein.
          Length = 570

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = -3

Query: 586 ILLLKSRHVKLRIAPYQCLCEFMTRINTVYRISLYLLYN---TLCIFFFFYFEEPRNASV 416
           I+L+ ++   LR  P +CL +FM         ++ + +N    L   FF  F   +NA++
Sbjct: 421 IVLMFNKSTLLRQNPEECLSKFMEHTTAENSDAVAIEWNQEKALVTLFFTVF--AKNATI 478

Query: 415 VTNKIVLIKNNHNYLKYVN*NAKH 344
            +    ++ N+    KYV  +  H
Sbjct: 479 ASKGYKMVLNDDLLWKYVKMSVDH 502


>AF014939-7|AAB63929.2|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein192 protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 291 YLLLNYFTHLKYHQATPKVVS*KLRF*L-LLIQISTALNLLQFSLHY 154
           YL+ N    +K H+ +PK    + +F + LLIQ+S  +    F+L Y
Sbjct: 218 YLIFNIVKQMKEHKMSPKTFELQKKFIITLLIQVSIPMICFIFTLIY 264


>Z77655-3|CAB01134.1|  426|Caenorhabditis elegans Hypothetical
           protein C56A3.3 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 535 CLCEFMTRINTVYRISLYLLYNTLCIFFF 449
           C       IN+VY I +Y++  TL  FFF
Sbjct: 192 CPTSLFVTINSVYNIYMYMVLMTLLPFFF 220


>AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine
           receptor, class z protein28 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 535 CLCEFMTRI-NTVYRISLYLLYNTLCIFFFFYFEEPRNASVVTNKIVLIKNNHNYLKYVN 359
           C+C F   I + V+ + + LL   +  FF FYF     +S+   K+ +   N+ Y  +V+
Sbjct: 96  CVCLFYLYIFDQVFHLIILLL--AIQRFFLFYFPSSERSSIKFQKLFIKYINYVYTVFVS 153


>AC024214-16|ABA00187.1|  343|Caenorhabditis elegans Hypothetical
           protein Y77E11A.16 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 8/30 (26%), Positives = 21/30 (70%)
 Frame = -3

Query: 172 TIFATLQTVRLITTVTFLQPHSNDTKHMFC 83
           TIF+ +  ++ I T+ +++P+++  + +FC
Sbjct: 285 TIFSVIPLIQPIITIYYIKPYNHGFRRLFC 314


>AC006624-2|AAF39784.2|  254|Caenorhabditis elegans Hypothetical
           protein C53D5.2 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 268 SFKIPSSNPQSCFLKITILITINSNFYCTQFTTIF 164
           S  +P  +  SC L +  LIT+    +C  FT  F
Sbjct: 83  SLHVPHVDRSSCLLNVLFLITVLIMIFCGYFTIQF 117


>L23651-4|AAU87828.2|  294|Caenorhabditis elegans Hypothetical
           protein C29E4.13 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 678 CH*TTASEAWLGIQ*HNYCIHLKFK 604
           CH     + W G + H  C HLK++
Sbjct: 119 CHCNAIIKTWRGFEYHVLCTHLKYR 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,377,643
Number of Sequences: 27780
Number of extensions: 274300
Number of successful extensions: 613
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)