Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0615
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,...    29   2.9  
At1g64670.1 68414.m07331 hydrolase, alpha/beta fold family prote...    28   6.8  
At5g38396.1 68418.m04641 F-box family protein contains F-box dom...    27   9.0  
At2g28250.1 68415.m03429 protein kinase family protein contains ...    27   9.0  

>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
           putative similar to 30S ribosomal protein S10 GB:P02364
           [Escherichia coli] (est matches suggest the N-terminal
           extension)
          Length = 191

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -3

Query: 298 IQLFTSKLLYSFKIPSSNPQSCFLKITIL 212
           +   +S LL SF IPSS+P S  LK+++L
Sbjct: 3   VSTVSSFLLPSFGIPSSSPSSTRLKVSLL 31


>At1g64670.1 68414.m07331 hydrolase, alpha/beta fold family protein
           low similarity to
           2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
           [Pseudomonas putida] GI:2822275; contains Pfam profile
           PF00561: hydrolase, alpha/beta fold family
          Length = 469

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 571 SRHVKLRIAPYQCLCEFMTRINTVYRISLYLLYNTLC 461
           SR V L +     L EF+TR+ T  R+  YL+   LC
Sbjct: 330 SRTVSLVLCKNHHLLEFLTRLLTRNRMRTYLIEGFLC 366


>At5g38396.1 68418.m04641 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 462

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 369 NMSIEMPNTRTLAMFYHFKKNNCTFNYLLLNYFTHLKY 256
           ++++  P+ +TL M  +    + +F+   L YF+H KY
Sbjct: 207 DVTVSNPSLKTLTMSSNIYSGSISFDTPSLVYFSHFKY 244


>At2g28250.1 68415.m03429 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 565

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 507 LILVINSHRHWYGAILNFTCLDFSS 581
           ++LV+ S +  YG + N+TC  FSS
Sbjct: 11  ILLVLISIQQCYGGVSNYTCTCFSS 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,859,641
Number of Sequences: 28952
Number of extensions: 227919
Number of successful extensions: 367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)